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  • BioScripts Public

    Collection of scripts for metagenomic

    Python 4 Updated Dec 6, 2024

  • Seahorse Public

    Wrapper for graphics

    Python 1 Updated Oct 23, 2024

  • jsgounot.github.io Public

    Forked from dirkfabisch/mediator

    Personal blog

    HTML Other Updated Sep 27, 2024

  • floria_analysis_workflow Public

    Worflows linked with Glopp

    Python 3 1 Updated Sep 25, 2024

  • SkANI2Mummer Public

    2 steps pairwise distances

    Python MIT License Updated Sep 20, 2024

  • snakemake Public

    Forked from snakemake/snakemake

    This is the development home of the workflow management system Snakemake. For general information, see

    HTML MIT License Updated Jul 11, 2024

  • GTDB_SDL Public

    GTDB Strains downloader and clustering

    Python MIT License Updated May 27, 2024

  • PyBlast Public

    Local and global alignment using multiprocessing

    Python 1 Updated Apr 25, 2024

  • MAGBinning Public

    Another MAG binning pipeline

    Python 2 2 Updated Sep 8, 2023

  • StrainXpress Public

    Forked from kangxiongbin/StrainXpress

    StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high complexity metagenome sequencing data at strain resolution.

    C++ GNU General Public License v3.0 Updated Jul 13, 2023

  • strainberry Public

    Forked from rvicedomini/strainberry

    Automated strain separation of low-complexity metagenomes

    Python MIT License Updated Jun 6, 2023

  • mtms-lab.github.io Public

    Forked from barryclark/jekyll-now

    Build a Jekyll blog in minutes, without touching the command line.

    JavaScript MIT License Updated Feb 9, 2023

  • Badread Public

    Forked from rrwick/Badread

    a long read simulator that can imitate many types of read problems

    Python GNU General Public License v3.0 Updated Jan 13, 2023

  • bioconda-recipes Public

    Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell Updated Jan 19, 2022

  • DeepVirFinder Public

    Forked from jessieren/DeepVirFinder

    Identifying viruses from metagenomic data by deep learning

    Python Other Updated Jan 5, 2022

  • metagenomic-pipelines Public

    8 Updated Oct 7, 2021

  • PhyloCircular Public

    Circular matplotlib phylogenetic tree

    Python 6 1 Updated Apr 10, 2021

  • CheckM Public

    Forked from Ecogenomics/CheckM

    Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

    Python GNU General Public License v3.0 Updated Aug 10, 2020

  • CoronaTools Public

    Covid-19 graphic tools

    Python Updated May 3, 2020

  • PyCoronaData Public

    Python interface to play with Hopkins COVID-19 data

    Python Updated May 3, 2020

  • nexflow_pipelines Public

    Forked from lch14forever/nexflow_pipelines
    Nextflow Updated Nov 18, 2019

  • PgPy Public

    Population genomics using python

    Python Updated Nov 13, 2019

  • PyPan Public

    PanGenome construction pipeline

    Python 2 Updated Nov 13, 2019

  • CFreecW Public

    Control Freec python wrapper

    Python Updated Nov 12, 2019

  • PySegs Public

    Small module to work with windows

    Python Updated Jul 16, 2019

  • Lissajous Public

    Lissajous curve table using python

    Python 1 Updated Feb 8, 2019

  • AutoBitArray Public

    Wrapper of the BitArray module

    Python Updated Apr 29, 2018