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A list of interesting genome browser and genome visualization programs

TypeScript 909 114 Updated Feb 21, 2025

A very small Cloudflare Worker that compares response times of KV to D1

TypeScript 19 1 Updated Apr 4, 2024

Unofficial Bitwarden compatible server written in Rust, formerly known as bitwarden_rs

Rust 42,019 1,997 Updated Feb 19, 2025

Run Length Encoded vectors for julia, inspired by BioConductor.

Julia 20 7 Updated Jan 13, 2024
R 4 Updated Nov 28, 2024

The MultipleTesting package offers common algorithms for p-value adjustment and combination and more…

Julia 38 7 Updated Nov 12, 2023
Lean 1 Updated Nov 5, 2023

Independent Hypothesis Weighting for multiple testing with side-information in Julia

Julia 6 1 Updated Aug 1, 2023

C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings

C++ 153 13 Updated Jul 23, 2024

Wally: Visualization of aligned sequencing reads and contigs

C++ 111 6 Updated Dec 20, 2024

Reproduction code for "Empirical Bayes mean estimation with nonparametric errors via order statistic regression on replicated data"

R 4 1 Updated Apr 29, 2022

Per-base per-nucleotide depth analysis

Rust 125 17 Updated Jan 16, 2025

Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.

Rust 118 4 Updated Dec 30, 2020

Bioinformatics I/O libraries in Rust

Rust 560 56 Updated Feb 23, 2025

Conda environment and package management extension from within Jupyter

TypeScript 269 31 Updated Jan 6, 2025

Statistical bootstrapping library for Julia

Julia 110 27 Updated Nov 5, 2023
Rust 12 3 Updated Aug 12, 2019

ntHash implementation in Rust

Rust 35 6 Updated Jul 12, 2024

Slides & exercises from the presentation on Rust concurrency

Rust 2 3 Updated Apr 26, 2019

A Wes Anderson color palette for R

R 1,986 147 Updated Jun 13, 2024
Rust 51 13 Updated Sep 20, 2022

A fast file deduplicator

Rust 188 10 Updated Sep 4, 2023

A cat(1) clone with wings.

Rust 51,243 1,282 Updated Feb 23, 2025

A command-line benchmarking tool

Rust 24,101 382 Updated Feb 1, 2025

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

Rust 317 83 Updated Feb 19, 2025

Color DNA/RNA bases in terminal output

Python 20 3 Updated Aug 29, 2017

The Platinum Genomes Truthset

86 9 Updated Nov 8, 2017

Python for Bioinformatics

OpenEdge ABL 251 105 Updated Oct 1, 2020

Add ons for orgmode

78 18 Updated Jun 5, 2024
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