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Commits on Sep 3, 2021

• allow whole dataframe to be read in if not all columns are present

  

  Julia Eve Olivieri

  committed
  ef3d837

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Commits on Jul 21, 2021

• added extra splizsite columns to final output

  

  Julia Eve Olivieri

  committed
  4ef35aa

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Commits on Jul 14, 2021

• added tsv to parquet step, more documentation

  

  Julia Eve Olivieri

  committed
  f1bb3ba

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• added final summary output to pipeline

  

  Julia Eve Olivieri

  committed
  c758ae3

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Commits on Jul 13, 2021

• add splizsites to pipeline

  

  Julia Eve Olivieri

  committed
  6bd24f4

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Commits on Jul 12, 2021

• add spliz/psi simulation code

  

  Julia Eve Olivieri

  committed
  07a986b

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• reduced environment and removed unneeded package imports

  

  Julia Eve Olivieri

  committed
  5134b70

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Commits on Jul 10, 2021

• added revision figures

  

  Julia Eve Olivieri

  committed
  e693157

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Commits on Apr 10, 2021

• simplified input parameters

  

  Julia Eve Olivieri

  committed
  5b9b869

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Commits on Apr 7, 2021

• updated romano p values

  

  Julia Eve Olivieri

  committed
  d98c237

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Commits on Mar 31, 2021

• added paper numbers notebook and romano p values

  

  Julia Eve Olivieri

  committed
  8046ec9

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Commits on Mar 17, 2021

• added Romano p value adjustment

  

  Julia Eve Olivieri

  committed
  ddb6f68

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Commits on Mar 9, 2021

• remove duplicate tissue from column read-in

  

  Julia Eve Olivieri

  committed
  9442380

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• removed pyarrow and inc_emp.p mentions

  

  Julia Eve Olivieri

  committed
  7a9e7b6

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Commits on Mar 8, 2021

• updated p value calculation

  

  Julia Eve Olivieri

  committed
  c85d3e6

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Commits on Feb 24, 2021

• changed z_dict to scz_dict in z score merge calculation

  

  Julia Eve Olivieri

  committed
  d2a689b

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Commits on Feb 13, 2021

• added perm_pvals

  

  Julia Eve Olivieri

  committed
  0dd73fb

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Commits on Feb 12, 2021

• add creation of SVD_normdonor or SVD_normgene folder

  

  Julia Eve Olivieri

  committed
  2fcd4a5

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Commits on Feb 5, 2021

• sped up and reduced memory for SVD

  

  Julia Eve Olivieri

  committed
  46d3ef3

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Commits on Jan 28, 2021

• incorporated SVD z score

  

  Julia Eve Olivieri

  committed
  847dbcb

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Commits on Dec 14, 2020

• fix problem with different scZ values for the same gene/cell

  

  Julia Eve Olivieri

  committed
  9f048b5

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Commits on Nov 20, 2020

• don't calculate SVD z scores

  

  Julia Eve Olivieri

  committed
  127861d

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• add output folder

  

  Julia Eve Olivieri

  committed
  792595a

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Commits on Nov 10, 2020

• changed more paths to relative

  

  Julia Eve Olivieri

  committed
  18b1390

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Commits on Nov 9, 2020

• add notebooks and scripts for creating figures

  

  Julia Eve Olivieri

  committed
  01d7da9

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• added scripts for the pipeline

  

  Julia Eve Olivieri

  committed
  2a4a310

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