Python composable command line interface toolkit

Python packaging and dependency management made easy

Protein Graph Library

a cowboy duel game written in C++ using raylib, inspired by the arcade game Gun Fight (Midway Games and Taito, 1975). All art is original

Updated documentation theme using Material for MkDocs

The LoCoHD metric for protein-protein structure comparison

python tools for TCR:peptide-MHC modeling and analysis

MDAnalysis is a Python library to analyze molecular dynamics simulations.

Super lightweight and fast mmCIF/PDB/MOL2 file parser into Pandas DataFrames and backwards writer.

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

Attempt at reproduction of AlphaFold2

A game theoretic approach to explain the output of any machine learning model.

This repository contains demos I made with the Transformers library by HuggingFace.

A collection of *fold* tools

flexible CDR based distance metrics

Python Packaging User Guide

Grouping of Lymphocyte Interactions by Paratope Hotspots

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

Python 3 API wrapper for Garmin Connect to get activity statistics

Open-source bioinformatics components for Dash

Python interface to running command-line and web-based MHC binding predictors

Deterministic malaria model using odin

Antibody Numbering and Antigen Receptor ClassIfication

📚 Collaborative cheatsheets for console commands