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katholt Follow

Overview Repositories 15 Projects 0 Packages 0 Stars 3

Overview
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katholt

Kat Holt katholt

164 followers · 0 following

http://holtlab.net
@DrKatHolt

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Overview Repositories 15 Projects 0 Packages 0 Stars 3

Overview
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Last updated Name Stars

KleborateModular_workflow Public
Forked from Marysteph/KleborateModular_workflow

Python GNU General Public License v3.0 Updated Apr 6, 2024
AMRrules Public

Organism-specific interpretation of AMR genotypes

Python 10 2 GNU General Public License v3.0 Updated Mar 13, 2024
reddog-nf Public

pipeline for read mapping, snp calling and annotation for bacterial genomes

Python 12 Updated Mar 12, 2024
R_project_template Public

Template repo for R-based analysis projects

HTML 1 1 Updated Feb 21, 2024
sonneityping Public

Python 8 2 Other Updated Mar 7, 2023
RedDog Public

Python 36 4 Updated Apr 14, 2022
srst2 Public

Short Read Sequence Typing for Bacterial Pathogens

Python 127 65 Other Updated Jun 20, 2021
typhoid Public

1 Updated Oct 19, 2017
plotTree Public

R 67 35 Updated Jul 8, 2016
elizabethkingia Public

assemblies of Elizabethkingia outbreak data

1 Updated Mar 31, 2016
NGSchallenge Public

Data for the outbreak investigation software challenge session at the ASM NGS 2015 conference

7 1 Updated Sep 26, 2015
vre Public

VRE analysis project

HTML 1 Updated Jul 10, 2015
sequence-data-tools Public
Forked from prmcadam/sequence-data-tools

Scripts for obtaining data, QC etc

Python Updated May 29, 2015
sysgen Public

Updated Apr 21, 2015
plotTreeShiny Public

R Updated Apr 15, 2015

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Kat Holt katholt

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Achievements

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KleborateModular_workflow Public

AMRrules Public

reddog-nf Public

R_project_template Public

sonneityping Public

RedDog Public

srst2 Public

typhoid Public

plotTree Public

elizabethkingia Public

NGSchallenge Public

vre Public

sequence-data-tools Public

sysgen Public

plotTreeShiny Public