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  1. analysis_pipelines analysis_pipelines Public

    Analysis pipelines for statistical genetic analysis

    R 4 4

  2. stephenslab/scATACseq-topics stephenslab/scATACseq-topics Public

    Analysis of single-cell ATAC-seq data using topic models.

    R 4 1

  3. xinhe-lab/ctwas xinhe-lab/ctwas Public

    package for the causal TWAS project

    R 39 12

  4. xinhe-lab/GSFA xinhe-lab/GSFA Public

    R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening data.

    C++ 19 2

  5. xinhe-lab/mapgen xinhe-lab/mapgen Public

    R package to perform gene mapping using functionally-informed genetic fine mapping

    R 5 3

  6. HarteminkLab/TOP HarteminkLab/TOP Public

    R package to predict TF occupancy using DNase-seq or ATAC-seq data

    R 1 1