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Preprocessing pipelines for various Electronic Health Records datasets, including MIMIC III.

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kirilklein/ehr_preprocess

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ehr_preprocess

This repo can be used to produce formatted versions of Electronic Health Records for MIMIC and other datasets.
Data is separated into types:

  • patients_info: PID and corresponding static information
  • concept.{eventtype}: PID, ADMISSION_ID, CONCEPT, TIMESTAMP, (TIMESTAMP_END, VALUE, VALUE_UNIT, ICUSTAY_ID)

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Preprocessing pipelines for various Electronic Health Records datasets, including MIMIC III.

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