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kitzmanlab

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  1. mimips mimips Public

    Python 2

  2. splicebench2023 splicebench2023 Public

    Benchmarking splice variant prediction algorithms using massively parallel splicing assays

    Jupyter Notebook 1

  3. pysamstats pysamstats Public

    Forked from alimanfoo/pysamstats

    A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.

    Python

  4. makeamip makeamip Public

    Python

  5. gars_burgess_2019 gars_burgess_2019 Public

    Scripts to analyze junction-specific GARS reads

    Python

  6. splfxseq splfxseq Public

    Splicing Effects-seq

    Python

Repositories

Showing 9 of 9 repositories
  • Pangolin Public Forked from tkzeng/Pangolin

    Pangolin is a deep-learning method for predicting splice site strengths.

    kitzmanlab/Pangolin’s past year of commit activity
    Python 0 GPL-3.0 33 0 0 Updated Jan 12, 2024
  • splicebench2023 Public

    Benchmarking splice variant prediction algorithms using massively parallel splicing assays

    kitzmanlab/splicebench2023’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Dec 5, 2023
  • splfxseq Public

    Splicing Effects-seq

    kitzmanlab/splfxseq’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 4, 2023
  • wt1_splice Public
    kitzmanlab/wt1_splice’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 9, 2023
  • mimips Public
    kitzmanlab/mimips’s past year of commit activity
    Python 2 0 0 0 Updated Dec 19, 2022
  • pou1f1_splicing Public
    kitzmanlab/pou1f1_splicing’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 14, 2021
  • gars_burgess_2019 Public

    Scripts to analyze junction-specific GARS reads

    kitzmanlab/gars_burgess_2019’s past year of commit activity
    Python 0 0 0 0 Updated Nov 5, 2019
  • makeamip Public
    kitzmanlab/makeamip’s past year of commit activity
    Python 0 0 0 0 Updated Aug 1, 2019
  • pysamstats Public Forked from alimanfoo/pysamstats

    A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.

    kitzmanlab/pysamstats’s past year of commit activity
    Python 0 44 0 0 Updated May 6, 2016

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