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Commits on Jul 10, 2012

• Comment clarification

  jts

  committed
  f034ff9

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• Cleaned up logic when discarding short pairs

  jts

  committed
  9feadc2

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• In diginorm, only pass paired reads when both pairs and longer than k

  jts

  committed
  077583d

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Commits on Jul 9, 2012

• Create tests for Jared's --paired patch. Minor tweaks to the same.

  

  Eric McDonald

  committed
  88831ae

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Commits on Jul 7, 2012

• Merge from 'ged-lab/master'.

  

  Eric McDonald

  committed
  52de836

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Commits on Jul 5, 2012

• Fix divide-by-zero crash from performing abundance filtering with an initial file which is empty.

  

  Eric McDonald

  committed
  1a7d08b

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Commits on Apr 7, 2012

• Implemented --paired mode, which only discards a read pair if both pairs are above the coverage threshold

  jts

  committed
  d87f0d9

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Commits on Apr 5, 2012

• Write FASTQ if the records have quality values

  jts

  committed
  6553fa7

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Commits on Apr 2, 2012

• changed reporting period

  ctb

  committed
  40a374e

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Commits on Feb 17, 2012

• oops, incorrect report formula

  ctb

  committed
  9d16ad7

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• added report-to-file option for diginorm

  ctb

  committed
  744e2ba

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Commits on Nov 23, 2011

• added false-positive rate calculation to normalize scripts

  ctb

  committed
  76d8c50

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Commits on Oct 10, 2011

• chmod +x all scripts.

  ctb

  committed
  6b02e4c

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Commits on Oct 9, 2011

• added normalize-by-min/med scripts for digital normalization

  ctb

  committed
  5a9822a

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