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Commits on Dec 4, 2023

• Fixes ValidateVcfs to handle when VCF is not colocated with index (broadinstitute#1137)

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  meganshand

  and

  jessicaway

  authored
  1fb087d

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Commits on Nov 30, 2023

• Np revert both vbid dockers (broadinstitute#1136)

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  nikellepetrillo

  and

  ekiernan

  authored
  41bb4b3

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• Updated description for Fastqprocessing as SplitFastq (broadinstitute#1134)

  aawdeh

  authored
  7333c7c

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Commits on Nov 28, 2023

• Fixed bug in ReblockGVCF when the index file is not located next to the GVCF (broadinstitute#1132)

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  meganshand

  and

  nikellepetrillo

  authored
  093ce41

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• PD2396 Update docker for fastqprocess to incorporate new changes. (broadinstitute#1128)

  aawdeh

  authored
  eee4ea0

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Commits on Nov 21, 2023

• Np add cell bender to multiome as optional task (broadinstitute#1125)

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Commits on Nov 20, 2023

• updated Metrics dockers to latest warp-tools (broadinstitute#1130)

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  ekiernan

  authored
  4169831

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Commits on Nov 17, 2023

• Fixed chrom sizes (broadinstitute#1129)

  ekiernan

  authored
  2d6e697

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• Update docker image to 2.0.0 (broadinstitute#1120)

  aawdeh

  authored
  43e4a08

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Commits on Nov 16, 2023

• Np summary snm3c (broadinstitute#1126)

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  nikellepetrillo

  authored
  4591917

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• Bump postcss from 8.4.24 to 8.4.31 in /website (broadinstitute#1091)

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  dependabot[bot]

  and

  nikellepetrillo

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  ad2ddbc

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• Bump @babel/traverse from 7.14.2 to 7.23.2 in /website (broadinstitute#1095)

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  dependabot[bot]

  and

  nikellepetrillo

  authored
  9de0648

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Commits on Nov 15, 2023

• Np add chomatin contacts (broadinstitute#1124)

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  nikellepetrillo

  authored
  dc0d3c4

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Commits on Nov 13, 2023

• Km add links to multiome workspace and count matrix overviews (broadinstitute#1122)

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  kayleemathews

  authored
  09f7932

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Commits on Nov 8, 2023

• PD2372-TagSort (broadinstitute#1106)

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  ekiernan

  authored
  c25ce33

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Commits on Nov 6, 2023

• Km Multiome and Optimus doc updates (broadinstitute#1117)

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  kayleemathews

  authored
  282b720

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Commits on Nov 1, 2023

• Add unique_reads_cgn_extraction task (broadinstitute#1107)

  aawdeh

  authored
  1be3ccd

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Commits on Oct 31, 2023

• Update inputs to CramToUnmappedBam test (broadinstitute#1104)

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  jessicaway

  authored
  412e631

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• Km add atac rrid and update multiome readme (broadinstitute#1109)

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  kayleemathews

  authored
  3668ba0

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Commits on Oct 27, 2023

• Merge pull request broadinstitute#1105 from broadinstitute/lk-PD-2387-snM3C

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  ekiernan

  authored
  b625fbb

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• Update CondensedSnm3C.wdl

  ekiernan

  committed
  e7a6e56

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• Add unique_reads_allc

  ekiernan

  committed
  1d35189

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• Km atac h5ad overview (broadinstitute#1102)

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  kayleemathews

  and

  ekiernan

  authored
  9852b15

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Commits on Oct 26, 2023

• add task dedup_unique_bam_and_index_unique_bam (broadinstitute#1103)

  aawdeh

  authored
  f834832

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Commits on Oct 25, 2023

• Merge pull request broadinstitute#1101 from broadinstitute/lk-PD-2380-snM3C-merge-sort-all-reads

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  ekiernan

  authored
  d8e0834

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• Cleaning up a few ls and pwds, adding echos

  ekiernan

  committed
  669225a

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• Added merge_original_and_split_bam_sort_all_reads_name_and_position

  ekiernan

  committed
  26347b5

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Commits on Oct 24, 2023

• PD-2379-add_remove_overlap_read_parts_task (broadinstitute#1094)

  aawdeh

  authored
  055a9ba

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Commits on Oct 20, 2023

• Remove the dropna and MATCH columns from JoinBarcodes (broadinstitute#1098)

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  ekiernan

  authored
  ad7adfb

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• Km fix broken links in WARP docs (broadinstitute#1097)

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  kayleemathews

  authored
  a9d6a0e

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Commits on Oct 13, 2023

• Lk pd 2374 update whitelist (broadinstitute#1093)

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  ekiernan

  authored
  848b3a7

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Commits on Oct 11, 2023

• Np add single end r1 r2 mapping dna mode and merge sort split reads by name (broadinstitute#1092)

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  nikellepetrillo

  and

  aawdeh

  authored
  53ba51f

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• Update UnmappedBamToAlignedBam.wdl (broadinstitute#1070)

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  ekiernan

  authored
  5889c28

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Commits on Oct 10, 2023

• Lk pd 2363 join barcodes (broadinstitute#1089)

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  ekiernan

  authored
  ee45f2f

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Commits on Oct 6, 2023

• Km fix broken links in docs (broadinstitute#1090)

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  kayleemathews

  authored
  afef0b8

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