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nikellepetrillo

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Commits on Nov 30, 2023

• Np revert both vbid dockers (broadinstitute#1136)

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Commits on Nov 21, 2023

• Np add cell bender to multiome as optional task (broadinstitute#1125)

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Commits on Nov 16, 2023

• Np summary snm3c (broadinstitute#1126)

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Commits on Nov 15, 2023

• Np add chomatin contacts (broadinstitute#1124)

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Commits on Oct 11, 2023

• Np add single end r1 r2 mapping dna mode and merge sort split reads by name (broadinstitute#1092)

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  aawdeh

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Commits on Sep 27, 2023

• add splut unmapped reads (broadinstitute#1087)

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Commits on Sep 26, 2023

• Np pd 2327 separate unmapped reads (broadinstitute#1084)

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Commits on Sep 7, 2023

• Np pd 2326 add mapping to snm3c (broadinstitute#1075)

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Commits on Aug 21, 2023

• Np sort and trim task snm3c (broadinstitute#1067)

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Commits on Aug 17, 2023

• Update verify bam id docker pd 2291 (broadinstitute#1049)

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Commits on Aug 15, 2023

• Np add test to snm3c (broadinstitute#1060)

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Commits on Aug 7, 2023

• Np update snaptoolsbwa dockers (broadinstitute#1056)

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Commits on Aug 2, 2023

• update umi tools and imputation eagle dockers (broadinstitute#1053)

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Commits on Jul 13, 2023

• Np update subread dockers pd 2284 (broadinstitute#1039)

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  ekiernan

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Commits on Jul 12, 2023

• Np update reference inputs PD-2223 (broadinstitute#1028)

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Commits on Jun 28, 2023

• Np add filtering to methylome (broadinstitute#995)

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Commits on Jun 22, 2023

• Np optimize cell barcode tags (broadinstitute#1015)

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Commits on Jun 15, 2023

• Np add multiome plumbing json (broadinstitute#1008)

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• Merge branch 'develop' into aa_bwamem2

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Commits on Jun 14, 2023

• Np optimize trim adapters (broadinstitute#1009)

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• Merge branch 'develop' into aa_bwamem2

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Commits on Jun 7, 2023

• Np dynamically size memory compare gvcfs (broadinstitute#1004)

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Commits on Jun 5, 2023

• Np add multiome to smart tests (broadinstitute#1003)

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Commits on Jun 2, 2023

• clean up multiome wrapper (broadinstitute#996)

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Commits on Jun 1, 2023

• make disk/mem available in JG tasks (broadinstitute#990)

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  jessicaway

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Commits on May 31, 2023

• Np create test for multiome (broadinstitute#964)

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Commits on May 11, 2023

• Merge branch 'develop' into aa_update_multiomeWDL

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Commits on May 5, 2023

• Merge branch 'develop' into aa_update_atac_wdl

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Commits on May 3, 2023

• Np update build indices docker (broadinstitute#970)

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Commits on Apr 20, 2023

• Np multiome wrapper wdl (broadinstitute#963)

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Commits on Apr 12, 2023

• Np methylome demultiplexing (broadinstitute#959)

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Commits on Apr 6, 2023

• Np add fragment file task (broadinstitute#957)

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• Merge branch 'develop' into emerge_add_batch_to_imputation

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Commits on Mar 29, 2023

• Np gene metrics remove cols from optimus and slideseq (broadinstitute#954)

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  ekiernan

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Commits on Mar 20, 2023

• Np remove some columns from optimus cell metrics csv (broadinstitute#946)

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  ekiernan

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