[pull] main from igvteam:main #7
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…ating a force quite
Fix bug interpreting read sequence = "*". Was interpreting as mismatch to reference.
…tempt o center the collapsed insertion. This is visually disturbing.
…e artifact that sometimes carries curve behond junction boundaries. Fixes #1535
) * Move the amazon credentials check at startup into an async thread * Profiling showed it was adding about half a second at startup --------- Co-authored-by: jrobinso <[email protected]>
Adding additional options for duplicate reads. * new GroupBy duplicates option * new Duplicates submenu which allows rapid toggling of duplicates between three states * Filtered: not visible * Visible: treated like normal reads * Textures: rendered with a visible slash texture
* Additional track hub support: * Fix bugs preventing loading of CHM13 / hs1 hub. Fixes #1643 * Enable addition of hubs as a track source to any IGV genome * UI improvements to track selection dialog
* Additional track hub support: * Fix bugs preventing loading of CHM13 / hs1 hub. Fixes #1643 * Enable addition of hubs as a track source to any IGV genome * UI improvements to track selection dialog
This fixes a confusing issue with cram files silently failing to load due to a missing class file.
* Catch Error instead of Exception when calling long running task * horrible bug
…ategory > a threshold (20)
* Support for large hubs (e.g. epignome roadmap) * Add count of total & selected tracks to hub category label
* Refactoring, streamline genome list
* Track panel simplification. * Autoselect gene tracks only for track assembly hubs
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