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KorcsmarosLab

https://www.korcsmaroslab.org

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  1. HMIpipeline HMIpipeline Public

    Python 5 4

  2. iSNP iSNP Public

    A novel precision medicine workflow, the integrated single nucleotide polymorphism network platform (iSNP), designed to determine the mechanisms by which SNPs affect cellular regulatory networks, a…

    Python 5 1

  3. ViralLink ViralLink Public

    ViralLink is a systems biology workflow which reconstructs and analyses networks representing the effect of viral infection on specific human cell types.

    Python 4

  4. organoid_regulatory_networks organoid_regulatory_networks Public

    R 3

  5. gut-COVID gut-COVID Public

    Github repository for the Gut-Covid project

    Python 3 1

  6. CytokineLink CytokineLink Public

    CytokineLink: a map of cytokine communication for inflammatory and infectious diseases

    R 2 3

Repositories

Showing 10 of 26 repositories
  • MicrobioLink2 Public

    A computational tool that analyzes the impact of host-microbe interaction on downstream signaling in human cells and tissues.

    korcsmarosgroup/MicrobioLink2’s past year of commit activity
    Python 1 BSD-2-Clause 1 0 0 Updated Dec 9, 2024
  • salmonella-TF-activity Public

    Salmonella prior knowledge network for transcription factor activity estimation

    korcsmarosgroup/salmonella-TF-activity’s past year of commit activity
    R 1 0 0 0 Updated Nov 7, 2024
  • iSNP Public

    A novel precision medicine workflow, the integrated single nucleotide polymorphism network platform (iSNP), designed to determine the mechanisms by which SNPs affect cellular regulatory networks, and how SNP co-occurrences contribute to disease pathogenesis in ulcerative colitis (UC).

    korcsmarosgroup/iSNP’s past year of commit activity
    Python 5 1 0 0 Updated Oct 4, 2024
  • system_genomics_analysis Public
    korcsmarosgroup/system_genomics_analysis’s past year of commit activity
    Python 0 0 0 0 Updated Oct 3, 2024
  • ulcerative-colitis-cytokine-networks Public
    korcsmarosgroup/ulcerative-colitis-cytokine-networks’s past year of commit activity
    R 0 0 0 0 Updated Sep 11, 2024
  • Hackathon_2024 Public

    Repository for the 2024 MicrobioLink hackathon

    korcsmarosgroup/Hackathon_2024’s past year of commit activity
    0 0 0 0 Updated Jul 12, 2024
  • cytokine_networks_cytosig Public

    Cytokine networks based on transcriptomics data deposited to the CytoSig database.

    korcsmarosgroup/cytokine_networks_cytosig’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated May 21, 2024
  • microbiolink_demo Public

    Demonstration of the updated MicrobioLink pipeline through an example dataset

    korcsmarosgroup/microbiolink_demo’s past year of commit activity
    Python 0 0 0 0 Updated Aug 11, 2023
  • AutophagyNetDB Public

    Repo for ARN2 database 2021 version

    korcsmarosgroup/AutophagyNetDB’s past year of commit activity
    Python 0 0 0 0 Updated Mar 13, 2023
  • CKL_CytoSig Public

    Cytokine-cytokine interactions generated from transcriptomics data found in the CytoSig database

    korcsmarosgroup/CKL_CytoSig’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Jan 12, 2023
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