In this repository, you will find all the code necessary to reproduce the figures, tables and general results for our paper Improving replicability in single-cell RNA-Seq cell type discovery with Dune. In particular, it relies on two other repository to analyse datasets (1, 2).
The Pancreas datasets were downloaded from the Hemberg group website: https://hemberg-lab.github.io/scRNA.seq.datasets/human/pancreas/ on October 1st, 2019. The AIBS datasets can be obtained from Neuroscience Multi-omics Archive (RRID : SCR 002001; nemoarchive.org), (Zeng sn SSv4 https://assets.nemoarchive.org/dat-k7p82j4 and Zeng sc SSv4 https://assets.nemoarchive.org/dat-55mowp9).
The preprint on Biorxiv can be found here and the Dune package is available here, (RRID : SCR 018218).