Update README.md

labbces · Oct 21, 2019 · 7dcd820 · 7dcd820
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Showing 1 changed file with 6 additions and 6 deletions.
diff --git a/workshops/Protein_Function_Annotation/README.md b/workshops/Protein_Function_Annotation/README.md
@@ -74,18 +74,18 @@ These files (in JSON format) are in the params/ folder. They should be edited ac
 
 **enrich.json** 
 **This file should be used when _enrich_ is specified as the service type. There are four items to be specified in this file.**
- 1. "organism": "**9606**", _--specify an organism with a taxon ID. (see Appendix on How to find a taxon ID?)
- 2. "annotDataSet": "**GO:0008150**", _--specify an annotation data set. (see Appendix on How to find the ID for supported annotation dataset?)  
- 3. "enrichmentTestType": "**FISHER**", _--enter either FISHER (for Fisher's Exact test) or BINOMIAL (for binomial distribution test)  
- 4. "correction": "**FDR**" _--specify the multi test correction method (FDR, BONFERRONI, or NONE)
+ 1. "organism": "**9606**", --specify an organism with a taxon ID. (see Appendix on How to find a taxon ID?)
+ 2. "annotDataSet": "**GO:0008150**", --specify an annotation data set. (see Appendix on How to find the ID for supported annotation dataset?)  
+ 3. "enrichmentTestType": "**FISHER**", --enter either FISHER (for Fisher's Exact test) or BINOMIAL (for binomial distribution test)  
+ 4. "correction": "**FDR**" --specify the multi test correction method (FDR, BONFERRONI, or NONE)
 
 **geneinfo.json** 
 **This file should be used when _geneinfo_ is specified as the service type. The organism taxon ID needs to be specified to match the uploaded data.**
 
  **ortholog.json** 
 **This file should be used when _ortholog_ is specified as the service type. There are two items to be specified**
- 1. "organism": "**9606**", _-- specify the organism of the uploaded genes
- 2. "orthologType": "**LDO**" _-- specify the type of ortholog, e.g., LDO (for least divergent ortholog), or all.
+ 1. "organism": "**9606**", -- specify the organism of the uploaded genes
+ 2. "orthologType": "**LDO**" -- specify the type of ortholog, e.g., LDO (for least divergent ortholog), or all.
 
 
 ### User Gene List