A Python package to visualise neuroanatomical data in atlas space

SRT(Super Rapid Train: https://etk.srail.kr/) wrapper for python

Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA

AlphaFold 3 inference pipeline.

A curated list of awesome Neuropixels resources.

JAX - A curated list of resources https://github.com/google/jax

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

A versatile Unity framework for studying rodent behavior on a 2D ball treadmill, with precise control, hardware integration, and real-time data collection across various tasks.

Real-Time Single-Unit Brain-Machine Interface

MATLAB Scripts for Spike Sorting with Kilosort2/3

CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation

Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF

DANDI command line client to facilitate common operations

Files and instructions for manufacturing NP1.0, NP2.0alpha, and NP2.0 Neuropixels chronic recording fixtures.

20+ high-performance LLMs with recipes to pretrain, finetune and deploy at scale.

🧑‍🏫 60+ Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), ga…

A Python-based module for creating flexible and robust spike sorting pipelines.

Electrophysiology Data Analysis Tools for SpikeGLX and Kilosort

This repository showcases various advanced techniques for Retrieval-Augmented Generation (RAG) systems. RAG systems combine information retrieval with generative models to provide accurate and cont…

Official inference repo for FLUX.1 models

High-resolution models for human tasks.

realtime BMI with spiketag

VIM Colour scheme

Packages for the Unity game engine, emphasizing animal studies in VR.

Matplotlib styles for scientific plotting

A modular and flexible software package for performing VR animal experiments in Unity.

PyTorch implementations of deep reinforcement learning algorithms and environments

PyTorch version of Stable Baselines, reliable implementations of reinforcement learning algorithms.

Functions to assess quality of spike sorting results

Low-latency interactive multi-stream Behavior Platform: a control console that integrate Jovian (Virtual Reality Platform) and FPGA&Spiketag (Real-time Ephys) and other sensor streams