fix to linux selection in mean_waveforms

lavmark · Mar 2, 2021 · 1edd064 · 1edd064
1 parent f18208f
commit 1edd064
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Showing 3 changed files with 4 additions and 4 deletions.
diff --git a/ecephys_spike_sorting/modules/mean_waveforms/__main__.py b/ecephys_spike_sorting/modules/mean_waveforms/__main__.py
@@ -36,7 +36,7 @@ def calculate_mean_waveforms(args):
         # Essential in linux where C_Waves executable is only callable through runit
         if (sys.platform.startswith,'win'):
             exe_path = os.path.join(args['mean_waveform_params']['cWaves_path'], 'runit.bat')
-        elif (sys.platform.startwith, 'linux'):
+        elif (sys.platform.startswith, 'linux'):
             exe_path = os.path.join(args['mean_waveform_params']['cWaves_path'], 'runit.sh')
         else:
             print('unknown system, cannot run C_Waves')

diff --git a/ecephys_spike_sorting/scripts/create_input_json.py b/ecephys_spike_sorting/scripts/create_input_json.py
@@ -66,8 +66,8 @@ def createInputJson(output_file,
 
     # location of kilosor respository and kilosort version
 
-    kilosort_repository = r'C:\Users\labadmin\Documents\jic\KS20_release'
-    KS2ver = '2.0'      # must equal '3.0', '2.5' or '2.0', and match the kiilosort_repository
+    kilosort_repository = r'C:\Users\labadmin\Documents\jic\KS3_fork\Kilosort2'
+    KS2ver = '3.0'      # must equal '3.0', '2.5' or '2.0', and match the kiilosort_repository
 
     # KS 3.0 does not yet output pcs.
     if KS2ver == '3.0':

diff --git a/ecephys_spike_sorting/scripts/sglx_multi_run_pipeline.py b/ecephys_spike_sorting/scripts/sglx_multi_run_pipeline.py
@@ -59,7 +59,7 @@
 #           these strings must match a key in the param dictionaries above.
 
 run_specs = [									
-						['SC024_092319_NP1.0_Midbrain', '0', '0,9', '0,1', ['cortex', 'medulla'] ]
+						['SC024_092319_NP1.0_Midbrain', '0', 'start,end', '0,1', ['cortex', 'medulla'] ]
 ]
 
 # ------------------