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emilyasterjones

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Commits on Jan 27, 2023

• Main script for 2.0 probes, including probe survey

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• Expand pre-Phy filters for hippocampal units

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Commits on Jan 18, 2023

• ChanMap now sets correct xcoords for multi-shank

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• TPrime & CWaves can now handle Kilosorting subsets of data

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• chanMapFromImro from Kilosort, but works for 2.0 probes

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• Enable user to specify time range and channel map for sorting

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Commits on Nov 2, 2022

• correcting functionality (see description)

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Commits on Sep 15, 2022

• Run script no longer separates AP & LFP processing

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Commits on Sep 8, 2022

• turning modules back on

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Commits on Aug 21, 2022

• Refactor main script

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Commits on Aug 18, 2022

• Update README.md

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Commits on Jul 21, 2022

• update prePhy to accept _1 suffix on metrics files

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Commits on May 20, 2022

• Directory name edits to allow pipeline to run off Oak data

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• Refactoring: made prePhy_filter module

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• Adding loop over all files

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Commits on May 19, 2022

• Refactor: separate catGT call for LFP now in main script

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• correcting error in new post-KS filters

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  committed
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Commits on May 17, 2022

• separating AP/NI (first run) & LFP (no gblcar) scripts

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• Adding QC steps to label MUA & noise

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Commits on May 14, 2022

• update scripts so TPrime works

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  committed
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Commits on May 13, 2022

• update scripts so kilosort helper works

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  committed
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• update multi_run script so catGT works

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  committed
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• update pipfile.lock from successful pipenv install

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• Merging with JC repo updates since Jan 8th

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Commits on May 12, 2022

• Turning on ks_copy_fproc

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Commits on May 11, 2022

• Matching JSON and run scripts to rig43 branch

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Commits on Jan 16, 2022

• include 'gate_list_string' as param, use it to rename catgt output dir

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• change cluster labels for 'noise' only, retain 'good' and 'mua'

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Commits on Jan 14, 2022

• fixed python mean_waveforms calc

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• Implementing Alex A's changes (except scripts)

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