Color palette package in R inspired by works at the Metropolitan Museum of Art in New York

Enhancing {ggplot2} plots with statistical analysis 📊📣

Color Schemes based around artwork and the Museum of Modern Art.

Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.

Working with eBird data in R

Automatically Stopping MCMC/MC3

R package for producing different types of titer plots

The Composer of ggplots

R package for subsampling genomic data based on epidemiological time series data.

A package for plotting maps in R with ggplot2

R package for studying environmental rasters and phylogenetic informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al. 2016, BMC Bioinf.)

Code for reproducing analysis in manuscript, "Lineage frequency time series reveal elevated levels of genetic drift in SARS-CoV-2 transmission in England"

R package with functions for pre- and post-processing of BEAST and BEAST2 files.

Generalized Additive Models in R: A Free Interactive Course

Tip Trait Association Test

Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categorical trait and a phylogeny.

A multi-algorithmic framework for phylogenetic inference

Real time and remote MCMC trace monitoring with BEASTIARY.

Munge GenBank files into FASTA and tab-separated metadata

Open source code for AlphaFold 2.

Useful bash one-liners for bioinformatics.

Online R learning for applied statistics

virusurf downloader

Generate density plots from BEAST phylogeography logfiles with Bayesian Factor threshold

Statistical Rethinking Course Winter 2020/2021

Pipeline components for real-time phylodynamic analysis

A Phylogenetics toolkit for Javascript