V1.0

CPP/GraphValidateCellECMC/.gitignore

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+.idea

CPP/GraphValidateCellECMC/CMakeLists.txt

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+cmake_minimum_required(VERSION 3.16)
+project(GraphValidateCellECMC)
+include_directories(/opt/local/include)
+set(CMAKE_CXX_STANDARD 14)
+
+include_directories(.)
+
+add_executable(GraphValidateCellECMC
+        cell.cc
+        checker.cc
+        Checker.h
+        GraphValidateCellECMC.cc
+        init.cc
+        inout.cc
+        main.cc
+        Param.h
+        refresh.cc)

CPP/GraphValidateCellECMC/Checker.h

@@ -1,3 +1,33 @@
+// JeLLyFysh/ParaSpheres - Multithreaded event-chain Monte Carlo with local times
+// - https://github.com/jellyfysh/paraspheres
+// Copyright (C) 2020 The JeLLyFysh organization
+// (see the AUTHORS file on jellyfysh/paraspheres for the full list of authors)
+//
+// This file is part of JeLLyFysh/ParaSpheres.
+//
+// JeLLyFysh/ParaSpheres is free software: you can redistribute it and/or modify
+// it under the terms of the GNU General
+// Public License as published by the Free Software Foundation, either > version
+// 3 of the License, or (at your option)
+// any later version.
+//
+// JeLLyFysh/ParaSpheres is distributed in the hope that it will be useful, but
+// WITHOUT ANY WARRANTY; without even 
+// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. 
+// See the GNU General Public License for more details.
+//
+// You should have received a copy of the GNU General Public License along with
+// JeLLyFysh/ParaSpheres in the LICENSE file. If not, see
+// <https://www.gnu.org/licenses/>.
+//
+// If you use JeLLyFysh/ParaSpheres in published work, please cite the following
+// reference
+// (see [Li2020] in References.bib):
+// Botao Li, Synge Todo, A. C. Maggs, Werner Krauth
+// Multithreaded event-chain Monte Carlo with local times,
+// arXiv e-prints: 2004.11040 (2020), https://arxiv.org/abs/2004.11040
+//
+
 #ifndef _CHECKER
 #define _CHECKER
 #include "boost/multi_array.hpp"

CPP/GraphValidateCellECMC/GraphValidateCellECMC.cc

@@ -1,3 +1,33 @@
+// JeLLyFysh/ParaSpheres - Multithreaded event-chain Monte Carlo with local times
+// - https://github.com/jellyfysh/paraspheres
+// Copyright (C) 2020 The JeLLyFysh organization
+// (see the AUTHORS file on jellyfysh/paraspheres for the full list of authors)
+//
+// This file is part of JeLLyFysh/ParaSpheres.
+//
+// JeLLyFysh/ParaSpheres is free software: you can redistribute it and/or modify
+// it under the terms of the GNU General
+// Public License as published by the Free Software Foundation, either > version
+// 3 of the License, or (at your option)
+// any later version.
+//
+// JeLLyFysh/ParaSpheres is distributed in the hope that it will be useful, but
+// WITHOUT ANY WARRANTY; without even 
+// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. 
+// See the GNU General Public License for more details.
+//
+// You should have received a copy of the GNU General Public License along with
+// JeLLyFysh/ParaSpheres in the LICENSE file. If not, see
+// <https://www.gnu.org/licenses/>.
+//
+// If you use JeLLyFysh/ParaSpheres in published work, please cite the following
+// reference
+// (see [Li2020] in References.bib):
+// Botao Li, Synge Todo, A. C. Maggs, Werner Krauth
+// Multithreaded event-chain Monte Carlo with local times,
+// arXiv e-prints: 2004.11040 (2020), https://arxiv.org/abs/2004.11040
+//
+
 #include "Checker.h"
 # include <iostream>
 # include <fstream>

CPP/GraphValidateCellECMC/Makefile

@@ -1,3 +1,34 @@
+# JeLLyFysh/ParaSpheres - Multithreaded event-chain Monte Carlo with local times
+# - https://github.com/jellyfysh/paraspheres
+# Copyright (C) 2020 The JeLLyFysh organization
+# (see the AUTHORS file on jellyfysh/paraspheres for the full list of authors)
+#
+# This file is part of JeLLyFysh/ParaSpheres.
+#
+# JeLLyFysh/ParaSpheres is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General
+# Public License as published by the Free Software Foundation, either > version
+# 3 of the License, or (at your option)
+# any later version.
+#
+# JeLLyFysh/ParaSpheres is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even 
+# the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. 
+# See the GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License along with
+# JeLLyFysh/ParaSpheres in the LICENSE file. If not, see
+# <https://www.gnu.org/licenses/>.
+#
+# If you use JeLLyFysh/ParaSpheres in published work, please cite the following
+# reference
+# (see [Li2020] in References.bib):
+# Botao Li, Synge Todo, A. C. Maggs, Werner Krauth
+# Multithreaded event-chain Monte Carlo with local times,
+# arXiv e-prints: 2004.11040 (2020), https://arxiv.org/abs/2004.11040
+#
+
+
 UNAME := $(shell uname)
 
 ifeq ($(UNAME), Linux)

CPP/GraphValidateCellECMC/Param.h

@@ -1,3 +1,34 @@
+// JeLLyFysh/ParaSpheres - Multithreaded event-chain Monte Carlo with local times
+// - https://github.com/jellyfysh/paraspheres
+// Copyright (C) 2020 The JeLLyFysh organization
+// (see the AUTHORS file on jellyfysh/paraspheres for the full list of authors)
+//
+// This file is part of JeLLyFysh/ParaSpheres.
+//
+// JeLLyFysh/ParaSpheres is free software: you can redistribute it and/or modify
+// it under the terms of the GNU General
+// Public License as published by the Free Software Foundation, either > version
+// 3 of the License, or (at your option)
+// any later version.
+//
+// JeLLyFysh/ParaSpheres is distributed in the hope that it will be useful, but
+// WITHOUT ANY WARRANTY; without even 
+// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. 
+// See the GNU General Public License for more details.
+//
+// You should have received a copy of the GNU General Public License along with
+// JeLLyFysh/ParaSpheres in the LICENSE file. If not, see
+// <https://www.gnu.org/licenses/>.
+//
+// If you use JeLLyFysh/ParaSpheres in published work, please cite the following
+// reference
+// (see [Li2020] in References.bib):
+// Botao Li, Synge Todo, A. C. Maggs, Werner Krauth
+// Multithreaded event-chain Monte Carlo with local times,
+// arXiv e-prints: 2004.11040 (2020), https://arxiv.org/abs/2004.11040
+//
+
+
 #ifndef _Param_h
 #define _Param_h
 

CPP/GraphValidateCellECMC/Readme.md

@@ -1,6 +1,9 @@
 ## C++ cell-based simulation for 2D hard spheres (` GraphValidateCellECMC.cc`).
 
-This code is based on a direct translation of the historic Fortran90 code in `Fortran90/Historic/` into `C++` (see Section 3 of [Li2020](https://arxiv.org/abs/2004.11040) in [References.bib](References.bib)).
+This code is based on a direct translation of the historic
+Fortran90 code in `Fortran90/Historic/` into `C++` (see
+Section 3 of [Li2020](https://arxiv.org/abs/2004.11040) in
+[References.bib](References.bib)).
 
 Particles move in a single direction, and explore the constraining polytope.
 

CPP/GraphValidateCellECMC/cell.cc

@@ -1,3 +1,33 @@
+// JeLLyFysh/ParaSpheres - Multithreaded event-chain Monte Carlo with local times
+// - https://github.com/jellyfysh/paraspheres
+// Copyright (C) 2020 The JeLLyFysh organization
+// (see the AUTHORS file on jellyfysh/paraspheres for the full list of authors)
+//
+// This file is part of JeLLyFysh/ParaSpheres.
+//
+// JeLLyFysh/ParaSpheres is free software: you can redistribute it and/or modify
+// it under the terms of the GNU General
+// Public License as published by the Free Software Foundation, either > version
+// 3 of the License, or (at your option)
+// any later version.
+//
+// JeLLyFysh/ParaSpheres is distributed in the hope that it will be useful, but
+// WITHOUT ANY WARRANTY; without even 
+// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. 
+// See the GNU General Public License for more details.
+//
+// You should have received a copy of the GNU General Public License along with
+// JeLLyFysh/ParaSpheres in the LICENSE file. If not, see
+// <https://www.gnu.org/licenses/>.
+//
+// If you use JeLLyFysh/ParaSpheres in published work, please cite the following
+// reference
+// (see [Li2020] in References.bib):
+// Botao Li, Synge Todo, A. C. Maggs, Werner Krauth
+// Multithreaded event-chain Monte Carlo with local times,
+// arXiv e-prints: 2004.11040 (2020), https://arxiv.org/abs/2004.11040
+//
+
 #include "Checker.h"
 #include <cmath>
 #include <cassert>

CPP/GraphValidateCellECMC/checker.cc

@@ -1,3 +1,32 @@
+// JeLLyFysh/ParaSpheres - Multithreaded event-chain Monte Carlo with local times
+// - https://github.com/jellyfysh/paraspheres
+// Copyright (C) 2020 The JeLLyFysh organization
+// (see the AUTHORS file on jellyfysh/paraspheres for the full list of authors)
+//
+// This file is part of JeLLyFysh/ParaSpheres.
+//
+// JeLLyFysh/ParaSpheres is free software: you can redistribute it and/or modify
+// it under the terms of the GNU General
+// Public License as published by the Free Software Foundation, either > version
+// 3 of the License, or (at your option)
+// any later version.
+//
+// JeLLyFysh/ParaSpheres is distributed in the hope that it will be useful, but
+// WITHOUT ANY WARRANTY; without even 
+// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. 
+// See the GNU General Public License for more details.
+//
+// You should have received a copy of the GNU General Public License along with
+// JeLLyFysh/ParaSpheres in the LICENSE file. If not, see
+// <https://www.gnu.org/licenses/>.
+//
+// If you use JeLLyFysh/ParaSpheres in published work, please cite the following
+// reference
+// (see [Li2020] in References.bib):
+// Botao Li, Synge Todo, A. C. Maggs, Werner Krauth
+// Multithreaded event-chain Monte Carlo with local times,
+// arXiv e-prints: 2004.11040 (2020), https://arxiv.org/abs/2004.11040
+
 #include "Checker.h"
 # include <iostream>
 # include <fstream>

CPP/GraphValidateCellECMC/init.cc

@@ -1,3 +1,33 @@
+// JeLLyFysh/ParaSpheres - Multithreaded event-chain Monte Carlo with local times
+// - https://github.com/jellyfysh/paraspheres
+// Copyright (C) 2020 The JeLLyFysh organization
+// (see the AUTHORS file on jellyfysh/paraspheres for the full list of authors)
+//
+// This file is part of JeLLyFysh/ParaSpheres.
+//
+// JeLLyFysh/ParaSpheres is free software: you can redistribute it and/or modify
+// it under the terms of the GNU General
+// Public License as published by the Free Software Foundation, either > version
+// 3 of the License, or (at your option)
+// any later version.
+//
+// JeLLyFysh/ParaSpheres is distributed in the hope that it will be useful, but
+// WITHOUT ANY WARRANTY; without even 
+// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. 
+// See the GNU General Public License for more details.
+//
+// You should have received a copy of the GNU General Public License along with
+// JeLLyFysh/ParaSpheres in the LICENSE file. If not, see
+// <https://www.gnu.org/licenses/>.
+//
+// If you use JeLLyFysh/ParaSpheres in published work, please cite the following
+// reference
+// (see [Li2020] in References.bib):
+// Botao Li, Synge Todo, A. C. Maggs, Werner Krauth
+// Multithreaded event-chain Monte Carlo with local times,
+// arXiv e-prints: 2004.11040 (2020), https://arxiv.org/abs/2004.11040
+//
+
 #include "Checker.h"
 #include <iostream>
 #include <fstream>

CPP/GraphValidateCellECMC/inout.cc

@@ -1,3 +1,32 @@
+// JeLLyFysh/ParaSpheres - Multithreaded event-chain Monte Carlo with local times
+// - https://github.com/jellyfysh/paraspheres
+// Copyright (C) 2020 The JeLLyFysh organization
+// (see the AUTHORS file on jellyfysh/paraspheres for the full list of authors)
+//
+// This file is part of JeLLyFysh/ParaSpheres.
+//
+// JeLLyFysh/ParaSpheres is free software: you can redistribute it and/or modify
+// it under the terms of the GNU General
+// Public License as published by the Free Software Foundation, either > version
+// 3 of the License, or (at your option)
+// any later version.
+//
+// JeLLyFysh/ParaSpheres is distributed in the hope that it will be useful, but
+// WITHOUT ANY WARRANTY; without even 
+// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. 
+// See the GNU General Public License for more details.
+//
+// You should have received a copy of the GNU General Public License along with
+// JeLLyFysh/ParaSpheres in the LICENSE file. If not, see
+// <https://www.gnu.org/licenses/>.
+//
+// If you use JeLLyFysh/ParaSpheres in published work, please cite the following
+// reference
+// (see [Li2020] in References.bib):
+// Botao Li, Synge Todo, A. C. Maggs, Werner Krauth
+// Multithreaded event-chain Monte Carlo with local times,
+// arXiv e-prints: 2004.11040 (2020), https://arxiv.org/abs/2004.11040
+
 #include <string>
 #include <fstream>
 #include <iostream>

CPP/GraphValidateCellECMC/main.cc

@@ -1,3 +1,32 @@
+// JeLLyFysh/ParaSpheres - Multithreaded event-chain Monte Carlo with local times
+// - https://github.com/jellyfysh/paraspheres
+// Copyright (C) 2020 The JeLLyFysh organization
+// (see the AUTHORS file on jellyfysh/paraspheres for the full list of authors)
+//
+// This file is part of JeLLyFysh/ParaSpheres.
+//
+// JeLLyFysh/ParaSpheres is free software: you can redistribute it and/or modify
+// it under the terms of the GNU General
+// Public License as published by the Free Software Foundation, either > version
+// 3 of the License, or (at your option)
+// any later version.
+//
+// JeLLyFysh/ParaSpheres is distributed in the hope that it will be useful, but
+// WITHOUT ANY WARRANTY; without even 
+// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. 
+// See the GNU General Public License for more details.
+//
+// You should have received a copy of the GNU General Public License along with
+// JeLLyFysh/ParaSpheres in the LICENSE file. If not, see
+// <https://www.gnu.org/licenses/>.
+//
+// If you use JeLLyFysh/ParaSpheres in published work, please cite the following
+// reference
+// (see [Li2020] in References.bib):
+// Botao Li, Synge Todo, A. C. Maggs, Werner Krauth
+// Multithreaded event-chain Monte Carlo with local times,
+// arXiv e-prints: 2004.11040 (2020), https://arxiv.org/abs/2004.11040
+
 // C++ version of the benchmark
 // The algorithm is identical to the fortran code
 // check whether every lifting take place on the constraint graph

CPP/GraphValidateCellECMC/refresh.cc

@@ -1,3 +1,32 @@
+// JeLLyFysh/ParaSpheres - Multithreaded event-chain Monte Carlo with local times
+// - https://github.com/jellyfysh/paraspheres
+// Copyright (C) 2020 The JeLLyFysh organization
+// (see the AUTHORS file on jellyfysh/paraspheres for the full list of authors)
+//
+// This file is part of JeLLyFysh/ParaSpheres.
+//
+// JeLLyFysh/ParaSpheres is free software: you can redistribute it and/or modify
+// it under the terms of the GNU General
+// Public License as published by the Free Software Foundation, either > version
+// 3 of the License, or (at your option)
+// any later version.
+//
+// JeLLyFysh/ParaSpheres is distributed in the hope that it will be useful, but
+// WITHOUT ANY WARRANTY; without even 
+// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. 
+// See the GNU General Public License for more details.
+//
+// You should have received a copy of the GNU General Public License along with
+// JeLLyFysh/ParaSpheres in the LICENSE file. If not, see
+// <https://www.gnu.org/licenses/>.
+//
+// If you use JeLLyFysh/ParaSpheres in published work, please cite the following
+// reference
+// (see [Li2020] in References.bib):
+// Botao Li, Synge Todo, A. C. Maggs, Werner Krauth
+// Multithreaded event-chain Monte Carlo with local times,
+// arXiv e-prints: 2004.11040 (2020), https://arxiv.org/abs/2004.11040
+
 #include "Checker.h"
 # include <iostream>
 using namespace std;

CPP/MultiThreadECMC/.gitignore

@@ -0,0 +1 @@
+.idea