Highlights
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spacexr Public
Forked from dmcable/spacexrSpatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
HTML GNU General Public License v3.0 UpdatedApr 5, 2024 -
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cellpose Public
Forked from MouseLand/cellposea generalist algorithm for cellular segmentation with human-in-the-loop capabilities
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedMay 1, 2022 -
chemprop Public
Forked from chemprop/chempropMessage Passing Neural Networks for Molecule Property Prediction
Python MIT License UpdatedApr 1, 2022 -
nfCore_scRNA Public
Forked from wtsi-hgi/yascpCombined Repo of the Cellbender, Deconvolution and QC metrics placed in nfCore template for transferability between institutions and different HPC setups.
Python GNU General Public License v3.0 UpdatedNov 2, 2021 -
muon Public
Forked from scverse/muonmuon is a multimodal omics Python framework
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 8, 2021 -
drawCell Public
Forked from svalvaro/drawCellR package to create cell pictures.
R UpdatedAug 18, 2021 -
rnaseq Public
Forked from nf-core/rnaseqRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Nextflow MIT License UpdatedMay 13, 2021 -
TwoSampleMR Public
Forked from MRCIEU/TwoSampleMRR package for performing 2-sample MR using MR-Base database
HTML Other UpdatedMar 12, 2021 -
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gwas-lecture Public
Forked from timeu/gwas-lectureLectures on Genome Wide Association Studies (GWAS) using Python, Limix and Jupyter Noteboos
Jupyter Notebook UpdatedNov 20, 2020 -
DENTIST Public
Forked from Yves-CHEN/DENTISTDENTIST (Detecting Errors iN analyses of summary staTISTics) is a QC tool for summary-data-based analyses.
C++ UpdatedSep 18, 2020 -
harmony-pytorch Public
Forked from lilab-bcb/harmony-pytorchPython BSD 3-Clause "New" or "Revised" License UpdatedJul 26, 2020 -
CELLECT Public
Forked from perslab/CELLECTCELLECT (CELL-type Expression-specific integration for Complex Traits)
Python UpdatedMay 31, 2020 -
marker_gene_db Public
This repository contains lists of various marker genes.
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CELLEX Public
Forked from perslab/CELLEXCELLEX (CELL-type EXpression-specificity)
Jupyter Notebook GNU General Public License v3.0 UpdatedMay 11, 2020 -
scrublet Public
Forked from vib-singlecell-nf/scrubletA repository for the scrublet module of the vib-singlecell-nf pipeline
Nextflow GNU General Public License v3.0 UpdatedApr 10, 2020 -
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performance Public
Forked from easystats/performance💪 Models' quality and performance metrics (R2, ICC, LOO, AIC, BF, ...)
R GNU General Public License v3.0 UpdatedMar 4, 2020 -
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scanpy_usage Public
Forked from scverse/scanpy_usageScanpy use cases.
HTML BSD 3-Clause "New" or "Revised" License UpdatedFeb 11, 2020 -
batchbench Public
Forked from cellgeni/batchbenchR GNU General Public License v3.0 UpdatedFeb 3, 2020 -
variantBedOverlap Public
Calculates the overlap of variants in LD with features from BED files
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skylab Public
Forked from HumanCellAtlas/skylabSecondary analysis pipelines
WDL BSD 3-Clause "New" or "Revised" License UpdatedNov 25, 2019 -
cellBrowser Public
Forked from maximilianh/cellBrowserPython pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
JavaScript GNU General Public License v3.0 UpdatedNov 21, 2019 -
dropSeqPipe Public
Forked from Hoohm/dropSeqPipeA SingleCell RNASeq pre-processing snakemake workflow
R Creative Commons Attribution Share Alike 4.0 International UpdatedNov 20, 2019 -
zUMIs Public
Forked from sdparekh/zUMIszUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
R GNU General Public License v3.0 UpdatedNov 12, 2019 -
scRNAseq-analysis-notes Public
Forked from crazyhottommy/scRNAseq-analysis-notesscRNAseq analysis notes from Ming Tang
MIT License UpdatedNov 11, 2019