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198 Open 114 Closed
198 Open 114 Closed
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Issues list

NH tag
#211 opened Jul 30, 2018 by apredeus
4
The reads rank in fq.gz influence the MAPPING results?
#210 opened Jun 30, 2018 by loganylchen
How to get the randomly best hit with bwa-mem?
#209 opened Jun 19, 2018 by zhangrengang
bwa mem - memory usage with paired reads vs single reads
#208 opened Jun 13, 2018 by unode
bwa mem -a option
#206 opened Jun 4, 2018 by prasundutta87
Error handling of empty sequence
#205 opened Jun 4, 2018 by caleblareau
Bwa ONT parameters
#204 opened Jun 1, 2018 by npavlovikj
EOF marker is absent. The input is probably truncated.[bam_header_read] invalid BAM binary header (this is not a BAM file)
#200 opened May 10, 2018 by U201412486
Patch proposals for interactively working with BWA
#199 opened May 9, 2018 by nh13
Error: /usr/bin/ld: cannot find -lz
#197 opened Apr 26, 2018 by rakesh4osdd
Sai file was created but having 0 size
#196 opened Apr 20, 2018 by kimdh27
Testing practices
#193 opened Apr 16, 2018 by ionox0
How can I get the exact match?
#191 opened Apr 8, 2018 by jia-zhuang
1
Update bwakit release
#189 opened Apr 4, 2018 by godotgildor
1
Please enhance documentation on the recommended use of the BWA MEM -M and -Y option
#188 opened Apr 3, 2018 by mdkeehan
5
Minimum score threshold (-T option) is not applied to paired reads
#187 opened Apr 1, 2018 by gmagoon
5
"Failed to locate index" despite indexing
#186 opened Mar 26, 2018 by thatcatlooksstrong
bwa -R <@RG> induces issue in @PG
#185 opened Mar 21, 2018 by splaisan
[W::sam_read1] parse error at line 1
#184 opened Mar 19, 2018 by haidudu
2
Throw out reads in the alignment?
#180 opened Feb 23, 2018 by Alice82
Recommendations about bwa / alt contigs for TNXB/RCCX/MHC class III missing from IMGT/HLA
#179 opened Feb 13, 2018 by nyl2002
bwa aln: bwa-0.7.15 SAI file not generated
#177 opened Feb 8, 2018 by NemanjaVucic90
how to make bwa search the entire reference sequence?
#176 opened Jan 22, 2018 by mbsimonovic
NIH download URL for GRCh38 moved
#175 opened Jan 19, 2018 by draeath
1
make install target
#172 opened Dec 26, 2017 by fxcoudert
ProTip! no:milestone will show everything without a milestone.