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Issues list

making XA_drop_ratio an option
#59 opened Mar 31, 2016 by voutcn
how to calculate MAPQ in a bam ?
#61 opened Apr 11, 2016 by WinterLi1993
Is README-alt.md up to date?
#67 opened Jun 4, 2016 by vdauwera
bwa index problem
#75 opened Jun 20, 2016 by gsong1205
how to Improve mapping results
#52 opened Feb 25, 2016 by zusman
Ambiguous reference bases
#88 opened Sep 19, 2016 by armintoepfer
Pair information for ALT
#97 opened Nov 14, 2016 by mjko1210
BWA-MEM2 for repetitive regions
#437 opened Dec 3, 2024 by rmayang28
ProTip! Adding no:label will show everything without a label.