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Can we consider to add this flag to the Makefile, it enables users that have bwa as their dependency to create shared objects.
From the manual page
-fPIC
If supported for the target machine, emit position-independent code, suitable for dynamic linking and avoiding any limit on
the size of the global offset table. This option makes a difference on AArch64, m68k, PowerPC and SPARC.
Position-independent code requires special support, and therefore works only on certain machines.
When this flag is set, the macros "pic" and "PIC" are defined to 2.