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fixed a compiler error #426

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fixed a compiler error #426

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35f5334
trying to add autotools
kemin711 May 31, 2017
fc23630
reorganizing directory structure
kemin711 May 31, 2017
975216f
Adding source files
kemin711 May 31, 2017
063fefd
Add info files for autotools
kemin711 Jun 1, 2017
23299a8
add some autotools files
kemin711 Jun 1, 2017
3cac411
add more autoconf file
kemin711 Jun 1, 2017
33628a1
markdown syntax error fixed for header
kemin711 Jun 1, 2017
82be219
edited readme
kemin711 Jun 1, 2017
b880625
changed README
kemin711 Jun 1, 2017
6245887
add configure dependency
kemin711 Jun 1, 2017
6bcda47
new file: config.guess
kemin711 Jun 1, 2017
0429be5
add make template file
kemin711 Jun 1, 2017
08c5de4
new file: config.h.in
kemin711 Jun 2, 2017
adf629d
-R parsing has a bug
kemin711 Jun 14, 2017
10ff15a
add missed header files to distribution
kemin711 Jun 22, 2017
5aba281
Merge branch 'master' of github.com:kemin711/bwa
kemin711 Jul 27, 2024
7e4a1cc
fix one compiler error a few warnings
kemin711 Jul 27, 2024
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add missed header files to distribution
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@kemin711
kemin711 committed Jun 22, 2017
commit 10ff15a28c2138b6e259baf386614000f44a092f
2 changes: 1 addition & 1 deletion Makefile.in
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Expand Up @@ -162,7 +162,7 @@ CSCOPE = cscope
DIST_SUBDIRS = $(SUBDIRS)
am__DIST_COMMON = $(srcdir)/Makefile.in $(srcdir)/config.h.in AUTHORS \
COPYING ChangeLog INSTALL NEWS README ar-lib compile \
config.guess config.sub depcomp install-sh ltmain.sh missing
config.guess config.sub install-sh ltmain.sh missing
DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
distdir = $(PACKAGE)-$(VERSION)
top_distdir = $(distdir)
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2 changes: 1 addition & 1 deletion src/Makefile.am
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@@ -1,6 +1,6 @@
# for building both the bwa library and the binary

libheaders = utils.h kstring.h ksw.h bwt.h bntseq.h bwa.h bwamem.h malloc_wrap.h QSufSort.h rope.h rle.h
libheaders = utils.h kstring.h ksw.h bwt.h bntseq.h bwa.h bwamem.h malloc_wrap.h QSufSort.h rope.h rle.h ksort.h kbtree.h khash.h kvec.h bwtsw2.h
libsources= utils.c kthread.c kstring.c ksw.c bwt.c bntseq.c bwa.c bwamem.c bwamem_pair.c bwamem_extra.c malloc_wrap.c QSufSort.c bwt_gen.c rope.c rle.c is.c bwtindex.c

appsources = bwashm.c bwase.c bwaseqio.c bwtgap.c bwtaln.c bamlite.c bwape.c kopen.c pemerge.c maxk.c bwtsw2_core.c bwtsw2_main.c bwtsw2_aux.c bwt_lite.c bwtsw2_chain.c fastmap.c bwtsw2_pair.c
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2 changes: 1 addition & 1 deletion src/Makefile.in
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Expand Up @@ -349,7 +349,7 @@ target_alias = @target_alias@
top_build_prefix = @top_build_prefix@
top_builddir = @top_builddir@
top_srcdir = @top_srcdir@
libheaders = utils.h kstring.h ksw.h bwt.h bntseq.h bwa.h bwamem.h malloc_wrap.h QSufSort.h rope.h rle.h
libheaders = utils.h kstring.h ksw.h bwt.h bntseq.h bwa.h bwamem.h malloc_wrap.h QSufSort.h rope.h rle.h ksort.h kbtree.h khash.h kvec.h bwtsw2.h
libsources = utils.c kthread.c kstring.c ksw.c bwt.c bntseq.c bwa.c bwamem.c bwamem_pair.c bwamem_extra.c malloc_wrap.c QSufSort.c bwt_gen.c rope.c rle.c is.c bwtindex.c
appsources = bwashm.c bwase.c bwaseqio.c bwtgap.c bwtaln.c bamlite.c bwape.c kopen.c pemerge.c maxk.c bwtsw2_core.c bwtsw2_main.c bwtsw2_aux.c bwt_lite.c bwtsw2_chain.c fastmap.c bwtsw2_pair.c
appheaders = bwase.h bwtgap.h bwtaln.h bamlite.h bwt_lite.h
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