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Pull requests list

PPC64 patches
#71 opened Jun 10, 2016 by yhcheng Loading…
15
Use SAM headers from index directory's <prefix>.hdr if it exists
#348 opened Mar 18, 2022 by jmarshall Loading…
6
travis: added arm64, ppc64le and s390x tests with simde
#283 opened May 17, 2020 by junaruga Loading…
1
7
performance increase in alignment
#279 opened Apr 23, 2020 by andreasbuhr Loading…
7
Add documentation describing the output format of out.hla.* files (doc fix only)
#39 opened Jan 5, 2015 by heuermh Loading…
3
Fixed output, as newlines were missing.
#22 opened Feb 6, 2014 by jvhaarst Loading…
3
Adding a flag to sampe (-d) to disable pair rescuing if too many rescue attempts are made.
#12 opened Sep 30, 2012 by drio Loading…
3
Proposed enhancement to the FAQ with a line for -M
#198 opened May 9, 2018 by mdkeehan Loading…
2
Convert "properly read" constants to command line parameters
#309 opened Jan 29, 2021 by gdgib-roche Loading…
1
set optimization from -O2 to -O3, 3.4 % performance increase observed
#278 opened Apr 22, 2020 by andreasbuhr Loading…
1
Fix potential assertion in bntseq fails #120
#243 opened Jun 25, 2019 by yanlinlin82 Loading…
1
bwa mem 20% speedup with vector instructions (Fixed intel-extend branch)
#226 opened Nov 24, 2018 by zamaudio Loading…
1
bwa mem: print qtip features
#156 opened Oct 17, 2017 by BenLangmead Loading…
1
mmap'ed access to reference files
#40 opened Jan 23, 2015 by ilveroluca Loading…
1
Multi comma-separated fastq for bwa-mem.
#24 opened Mar 26, 2014 by lindenb Loading…
1
Fix bam IO to take account of BAM_FPAIRED when checking BAM_FREAD1/2
#18 opened Jun 13, 2013 by mp15 Loading…
1
feat: add an option to output MD in the XA tag
#439 opened Jan 17, 2025 by nh13 Loading…
feat: add HN tag to bwa aln
#438 opened Jan 17, 2025 by nh13 Loading…
fixed a compiler error
#426 opened Jul 27, 2024 by kemin711 Loading…
Fix kt_for() declaration parameter types
#414 opened Mar 18, 2024 by jmarshall Loading…
1
Fix RNEXT output in xa2multi.pl
#391 opened Apr 26, 2023 by tsnorri Loading…
1
Added -fPIC as compile flag
#369 opened Aug 19, 2022 by lennykovac Loading…
Avoid conflicting with HTSlib's kstring.c functions
#346 opened Mar 7, 2022 by jmarshall Loading…
1
Freebsd and hurd compatibility
#312 opened Feb 4, 2021 by mr-c Loading…
Fix some typos
#311 opened Feb 4, 2021 by mr-c Loading…
ProTip! What’s not been updated in a month: updated:<2025-02-07.