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Commits on Mar 8, 2022

• removed a few useless lines

  lh3

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• removed the sequence heuristic in shortest_k()

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  lh3

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Commits on Feb 21, 2022

• r437: replaced khash with khashl

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  lh3

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Commits on Oct 19, 2020

• fixed a potential performance bug

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  lh3

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• preliminary solution to mixing linear/graph chains

  lh3

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Commits on Dec 30, 2019

• more debugging code

  lh3

  committed
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Commits on Nov 19, 2019

• r303: speedup graph chaining

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  lh3

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Commits on Sep 18, 2019

• r294: prefer reference path for short reads

  lh3

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Commits on Sep 4, 2019

• r281: more thorough aln throw LCR shortk

  lh3

  committed
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Commits on Aug 27, 2019

• r279: bugfix - path match not counted

  lh3

  committed
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Commits on Aug 20, 2019

• sync with lh3/gfatools@01ef5af

  lh3

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Commits on Jul 24, 2019

• r240: keep edge rank

  lh3

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Commits on Jul 20, 2019

• r238: removed unused variables

  lh3

  committed
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Commits on Jul 18, 2019

• r224: weigh on matching length when choosing paths

  lh3

  committed
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• r220: fixed a bug in krealloc; pos-aware mlen

  lh3

  committed
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Commits on Jul 17, 2019

• code cleanup

  lh3

  committed
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• r218: minor changes from the gc-seq2 branch

  lh3

  committed
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• r216: don't add up mlen to total score

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  lh3

  committed
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• r215: don't overcounting mlen for ending segs

  lh3

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• r214: backup; still buggy

  lh3

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• r213: fixed a bug in the last commit

  lh3

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• r212: fixed a memory bug

  lh3

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Commits on Jul 16, 2019

• r211: count mlen in gchain scoring

  lh3

  committed
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• mlen calculation apparently works

  lh3

  committed
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Commits on Jul 15, 2019

• code backup

  lh3

  committed
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Commits on Jul 14, 2019

• prepare to implement LIS in shork

  lh3

  committed
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• backup; need to make a change to README

  lh3

  committed
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Commits on Jul 12, 2019

• r199: hashing paths

  lh3

  committed
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• backup

  lh3

  committed
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Commits on Jul 11, 2019

• r197: moved shortest_k from gfa to minigraph

  lh3

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