Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Use Zarr library directly as a parallel write sink. #60

Open
wants to merge 5 commits into
base: master
Choose a base branch
from

Conversation

theAeon
Copy link

@theAeon theAeon commented Dec 21, 2024

This eliminates the full readback of the zarr chunks that was done to merge the outputs of the parallel _write_single_zarr block and is saving me a significant amount of time on large datasets.

Specifically, a 60 cell test dataset that was taking several hours in the zarr merge phase completed in 5 minutes. No I/O limited copy step.

@theAeon
Copy link
Author

theAeon commented Feb 6, 2025

Looks like MCDS.open doesn't like the outputs of these (fails on obs_dim lookup with a KeyError) so...bear with me i guess.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant