fix neomorph url bug

omb/app.py

@@ -3,14 +3,13 @@
 """
 
 import dash
-import dash_bootstrap_components as dbc
+import subprocess
 
 APP_ROOT_NAME = 'omb'
 
 app = dash.Dash(
     __name__,
     suppress_callback_exceptions=True,
-    # external_stylesheets=[dbc.themes.FLATLY],
     meta_tags=[
         {
             "name": "viewport",
@@ -20,3 +19,10 @@
 )
 app.title = 'mC Viewer'
 server = app.server
+
+# judge which server I am running and change the prefix
+host_name = subprocess.run(['hostname'], stdout=subprocess.PIPE, encoding='utf-8').stdout.strip()
+if host_name.lower().startswith('neomorph'):
+    ON_NEOMORPH = True
+else:
+    ON_NEOMORPH = False

omb/apps/brain_region_browser.py

@@ -595,5 +595,10 @@ def update_cell_type_sunburst(region_name):
      Input('region-name', 'children')]
 )
 def make_pair_scatter_markdown(coords, cell_type_level, region_name):
-    url = f'/scatter?coords={coords};meta={cell_type_level};br={region_name}'.replace(' ', '%20')
+    from ..app import ON_NEOMORPH, APP_ROOT_NAME
+    if ON_NEOMORPH:
+        prefix = f'/{APP_ROOT_NAME}'
+    else:
+        prefix = f''
+    url = f'{prefix}/scatter?coords={coords};meta={cell_type_level};br={region_name}'.replace(' ', '%20')
     return url

omb/apps/cell_type_browser.py

@@ -820,7 +820,12 @@ def make_pair_scatter_markdown(coord_base, gene, mc_type, cnorm, cell_type_name)
         cell_type_level = 'SubType'
     else:
         cell_type_level = 'MajorType'
-    url = f'/scatter?coords={coord_base};meta={cell_type_level};gene={gene};' \
+    from ..app import ON_NEOMORPH, APP_ROOT_NAME
+    if ON_NEOMORPH:
+        prefix = f'/{APP_ROOT_NAME}'
+    else:
+        prefix = f''
+    url = f'{prefix}/scatter?coords={coord_base};meta={cell_type_level};gene={gene};' \
           f'mc={mc_type};cnorm={",".join(map(str, cnorm))};ct={cell_type_name}'
     text = f'For more details, go to the [**Paired Scatter Browser**]({url.replace(" ", "%20")}).'
     return text

omb/apps/gene_browser.py

@@ -643,6 +643,11 @@ def get_gene_scatter_fig(coord_name, gene_int, mc_type, cnorm, gene_name):
      Input('mc-range-slider', 'value')]
 )
 def make_pair_scatter_markdown(coords, cell_meta, gene, mc_type, cnorm):
-    url = f'/scatter?coords={coords};meta={cell_meta};gene={gene};mc={mc_type};cnorm={",".join(map(str, cnorm))}'
+    from ..app import ON_NEOMORPH, APP_ROOT_NAME
+    if ON_NEOMORPH:
+        prefix = f'/{APP_ROOT_NAME}'
+    else:
+        prefix = f''
+    url = f'{prefix}/scatter?coords={coords};meta={cell_meta};gene={gene};mc={mc_type};cnorm={",".join(map(str, cnorm))}'
     text = f'For more details, go to the [**Paired Scatter Browser**]({url.replace(" ", "%20")})'
     return text