add models

lichen-lab · Apr 10, 2022 · 27f9e1d · 27f9e1d
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diff --git a/README.md b/README.md
@@ -6,3 +6,33 @@ By leveraging paired whole genome sequencing data and epigenetic functional assa
 
 <div align=center><img width="800" height="500" src="https://raw.githubusercontent.com/alfredyewang/DeepPerVar/main/src/DeepPerVar.jpeg"/></div>
 </center>  
+
+
+## DeepPerVar
+
+We implement a webserver to predict genome-wide H3K9ac signals and DNA methylation ratio and the mutation effect on these two epigenetics signals. The webserver can be accessed from [link].(http://35.202.146.70/). <br />
+<br />
+
+## Requirements and Installation
+
+DeepPerVar is implemented by Python3.
+
+- Python 3.8
+- samtools 1.15.1
+- hdf5 == 1.10.4
+- numpy >= 1.18.5
+- pytorch ==1.7.1
+
+Download [Reference Genome (hg19)]() [DeepPerVar Models] (https://drive.google.com/file/d/1Q_EzL_R4MLHSPYXKIqGUeXkDNx1yJ4WB/view?usp=sharing)
+
+```
+unzip Base.zip
+```
+
+Download DeepPerVar:
+```
+git clone https://github.com/alfredyewang/DeepPerVar
+```
+Install requirements
+```
+pip3 install -r requirements --user
diff --git a/requirements b/requirements
@@ -0,0 +1,3 @@
+- hdf5 == 1.10.4
+- numpy >= 1.18.5
+- pytorch ==1.7.1