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update README
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alfredyewang committed Apr 10, 2022
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Expand Up @@ -24,7 +24,7 @@ DeepPerVar is implemented by Python3.
- pytorch ==1.7.1
- biopython=1.19.2

Download [Reference Genome (hg19)]() [DeepPerVar Models](https://drive.google.com/file/d/1Q_EzL_R4MLHSPYXKIqGUeXkDNx1yJ4WB/view?usp=sharing)
Download [Reference Genome (hg19)](https://drive.google.com/file/d/1X5PdUzaSVMKAkzysrv9kVtBbU3VGCkgF/view?usp=sharing) [DeepPerVar Models](https://drive.google.com/file/d/1Q_EzL_R4MLHSPYXKIqGUeXkDNx1yJ4WB/view?usp=sharing)

```
unzip Models.zip Genomes.zip
Expand All @@ -34,10 +34,10 @@ Download DeepPerVar:
```
git clone https://github.com/alfredyewang/DeepPerVar
```
Install requirements, samtools can be downloaded and installed from (link)[http://www.htslib.org/download/]
Install requirements, samtools can be downloaded and installed from [link](http://www.htslib.org/download/).
```
pip3 install -r requirements --user
```
## Usage
You can see the input arguments for DeepPerVar by help option:

Expand All @@ -56,7 +56,6 @@ optional arguments:
The model directory for DeepPerVar
--res_dir <data_directory>
The data directory for save results

```

### Input File Format
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