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Update README.md
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likelet authored Nov 21, 2018
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Expand Up @@ -25,13 +25,14 @@ The online version can be easily accessed to perform analysis tasks with dataset
devtools::install_github("likelet/IDEA")
```

__User should notice that , the latest **shinyBS** is incompatible with IDEA at present ; Only the exact shingBS version (0.25) keep the IDEA work smoothly . This is because current shinyBS removed the__ ```
progressBar()
``` __function used in IDEA. To install the compatible shinyBS, you can type__
```R
devtools::install_github( "likelet/shinyBS")
```
Here list the command to install the related packages manually if devtools failed in installation:
__User should notice that , the latest **shinyBS** is incompatible with IDEA at present ; Only the exact shingBS version (0.25) keep the IDEA work smoothly . This is because current shinyBS removed the__ `progressBar()`__function used in IDEA. To install the compatible shinyBS, you can type__

```R
devtools::install_github( "likelet/shinyBS")
```
Here list the command to install the related packages manually if devtools failed in installation:

```R
cDep <- c("abind")
#dependencies from BIOCONDUCTOR
Expand Down Expand Up @@ -89,7 +90,8 @@ The above command can automaticly install the several dependencies which allows

### Run information.

**For computer with GUI**<br/>
**For computer with GUI**

Clone repository into local path and run as a Shiny App <br/>
example:
Clone repository into local directory '/Document/IDEA' (so that ui.R locates as '/Document/IDEA/ui.R') <br/>
Expand All @@ -106,7 +108,8 @@ Also, after install IDEA pakcages with no error print, users can simply input.
```
function to run application locally; Since there is only one function in this package, you can also print help massege in your R console;

**For server or computer without GUI (Run IDEA on a server)**.
**For server or computer without GUI (Run IDEA on a server)**.

Install shiny-server first and finish the configurations step according to [http://rstudio.github.io/shiny-server/latest/](http://rstudio.github.io/shiny-server/latest/)<br/>
Pull the package and install dependencies into your R environment; <br/>
Copy _IDEA_ folder under _inst_ dir into /srv/shiny-sever/ (or orther app location configured in `shiny-sever.conf` file)<br/>
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