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The Zavolab Automated RNA-seq Pipeline

Python 35 5 Updated Dec 22, 2024

A visual representation of Data an information lifecycles

R 1 Updated Dec 6, 2024

Repo for student website

HTML 24 11 Updated Nov 12, 2024

Helping you manage your data science projects sanely.

Python 42 5 Updated Nov 30, 2024

Repository to host tool-specific module files for the Nextflow DSL2 community!

Nextflow 287 735 Updated Jan 4, 2025

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Nextflow 952 713 Updated Dec 21, 2024

In this workshop, we went through the basic steps of FIELDimageR and FIELDimageR.Extra pipeline showing how to evaluate and apply remote sensing data and lab and field images from plant breeding ex…

R 3 Updated Nov 3, 2023

All resources provided during the 2022 Mentoring Sessions can be found here.

Jupyter Notebook 9 Updated Oct 31, 2022

An intelligent block matrix library for numpy, PyTorch, and beyond.

Python 300 32 Updated Aug 4, 2024

SplineDist: Automated Cell Segmentation with Spline Curves

Jupyter Notebook 65 15 Updated Sep 29, 2024

Algorithmic Impact Assessment - Évaluation de l'incidence algorithmique (TS/JS)

Vue 59 41 Updated Dec 4, 2024

MetaWorks is a flexible multi-marker metabarcode pipeline for processing paired-end Illumina reads from raw fastq.gz files to taxonomic assignments.

18 4 Updated Sep 19, 2023

jinja2-enabled jupyter notebooks

Python 35 6 Updated Aug 13, 2024

online notebooks for a review of genome sketching

Jupyter Notebook 60 10 Updated Sep 23, 2019

Provide a base definition for each BrAPI-specific term and open definition discussion/validation with the BrAPI community

1 2 Updated Apr 17, 2024

Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images

Python 112 23 Updated Feb 14, 2024

FIELDimageR: A R package to analyze orthomosaic images from agricultural field trials. This package is a compilation of functions to analyze pos-mosaicking images from research fields, and allows t…

R 245 92 Updated May 24, 2024

One Health Summer Institute's Introduction to Bioinformatics workshop. Session on Bioinformatics for AMR Research.

3 Updated Jun 18, 2021

SRA Tools

C 1,155 251 Updated Jan 3, 2025

A resource for scientists and the general public on bee-associated microbes/viruses and their impact on bee health

Java 4 4 Updated Sep 23, 2024

GFF and GVF specification documents

211 91 Updated Jun 18, 2024

The Visualization Multitool for Molecular Epidemiology and Bioinformatics

TypeScript 89 39 Updated Dec 9, 2024

A curated list of awesome Bioinformatics libraries and software.

3,249 619 Updated Dec 19, 2024

Extension of the base Drupal bootstrap theme for DivSeek-Canada

PHP 2 Updated Mar 1, 2021

Material from the Bioinformatics Research Support Network (BRSN) at Agriculture and Agri-Food Canada (AAFC) that are permitted for free and public access.

2 1 Updated Oct 26, 2021
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