Update igv #1
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* Rename menu item "Suppress filtered sites" to "Hide filtered sites" * Fix bug with ctrl-f / ctrl-b when filtering is on
…e interpretation for gff2 files as precise definition (frame or phase) is ambiguous, and there are examples of both uses in practice. Better to give no information than wrong information.
… be specified explicitly.
…ds features are fetched.
Refine hit testing for arcs.
* Add color swatch * Add explanatory note to color legends dialog
…URL works). (#811) * STANDARD tier does not contain the 'restore' S3 metadata, so NPE got triggered and depending on which path was chosen (File Tree vs URL, it got handled well or not). Bump up AWS SDKs while I am at it. Unfortunately the upstream LoadTracks refactor seems to be affecting the loading of Tracks since right after clicking on a chromosome, IGV hangs while downloading a lot of data... which ends up in an OOM condition /cc @jrobinso @reisingerf * Adding jackson.core in module-info.java solves the ClassNotFoundError, even if it's just an AWS transitive dependency * Bump AWS SDK to latest version
…ple tracks sharing the alignments spawning asyc loads. Prevent async loading of a single BAM file from a single reader (htsjdk not thread save)
…en loading multiple files in parallel * Remove unused "check session" method
…uld be the common "1 based inclusive" system. Internal representation is 0 based.
* Off-by-one errors
…ls" (#822) Correct apparent regressions (from 2.7.2 to 2.8.6) in rendering of alignment blocks with hidden indels. Correct: 1. empty space between alignment blocks at hidden deletions 2. shadows at block boundaries when drawing multiple times at same position 3. outlines at block boundaries for hidden indels Co-authored-by: Aaron Wenger <[email protected]>
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update igv