Skip to content

Issues: linsalrob/PhiSpy

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clear current search query, filters, and sorts
16 Open 39 Closed
16 Open 39 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Impossible to use training sets kept in other location than INSTALLATION_DIR enhancement
#31 opened Apr 21, 2020 by pdec updated May 20, 2020
1
Mark prophage regions at the end of contigs enhancement
#33 opened May 26, 2020 by linsalrob updated May 26, 2020
prophage fasta file
#54 opened Jul 7, 2021 by mujiezhang updated Jul 7, 2021
GFF3 File - Include the att sites
#55 opened Oct 29, 2021 by DNADoubleFelix updated Oct 29, 2021
No bases were counted for orf
#57 opened Mar 28, 2022 by simone-pignotti updated Mar 28, 2022
1
some problem with position of att site and prophage region
#59 opened May 20, 2022 by work-liuyang updated May 31, 2022
4
"Contig starting with a partial ORF" warning
#60 opened Dec 1, 2022 by EGTortuero updated Dec 1, 2022
ValueError: Need a Nucleotide or Protein alphabet
#63 opened May 11, 2023 by qianxin-kxy updated May 14, 2023
1
The glibc version is not compatible
#65 opened Nov 20, 2023 by work-liuyang updated Nov 20, 2023
1
output files not created
#66 opened Jan 11, 2024 by oirazoki updated Mar 1, 2024
2
Error during processing, no result output - TypeError: expected str, bytes or os.PathLike object, not StringIO
#67 opened Mar 1, 2024 by naturepoker updated Apr 2, 2024
2
TypeError: start=x <class 'float'>
#68 opened May 10, 2024 by schorlton-bugseq updated May 10, 2024
Tuning parameters for possibly missed prophage
#69 opened Jun 26, 2024 by schorlton-bugseq updated Jun 26, 2024
ValueError: LOCUS line does not contain - at position 75 in date
#70 opened Jul 1, 2024 by tjcu408 updated Jul 1, 2024
Error when sequence ID is too long fix help wanted
#53 opened Jun 28, 2021 by jcmckerral updated Aug 26, 2024
7
Running the same input file multiple times will yield different results
#71 opened Nov 17, 2024 by Dongdong-Chen updated Nov 17, 2024
ProTip! Mix and match filters to narrow down what you’re looking for.