Open-source usearch

A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes

NovelTree is a highly parallelized and computationally efficient phylogenomic workflow that infers gene families, gene family trees, species trees, and gene family evolutionary history.

README for Zenodo archive associated with publication Ultra-deep Sequencing of Hadza Hunter-Gatherers Recovers Vanishing Gut Microbes

A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.

A wrapper to identify, bin, classify, and predict host-viral relationship for viruses

A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.

any general scripts