littleblackfish
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FAMES-Taperer-v0 Public
Automation software for the tapering setup at the FAMES lab.
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apis-model Public
Discriminative modeling to support cis-regulation of DNA methylation
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apis-methylation Public
DNA methylation in the honey bee and some other Hymenopterans
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FastLED Public
Forked from FastLED/FastLEDThe FastLED library for colored LED animation on Arduino. Please direct questions/requests for help to the FastLED Reddit community: http://fastled.io/r We'd like to use github "issues" just for tr…
C++ MIT License UpdatedFeb 27, 2020 -
methylseq Public
Forked from nf-core/methylseqMethylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Nextflow MIT License UpdatedFeb 20, 2020 -
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MechWolf Public
Forked from MechWolf/MechWolf⚙️🐺 Robotic chemistry made easy
Python GNU General Public License v3.0 UpdatedNov 11, 2019 -
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gimmemotifs Public
Forked from vanheeringen-lab/gimmemotifsSuite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.
Python MIT License UpdatedOct 25, 2019 -
BWASP Public
Forked from BrendelGroup/BWASPBisulfite-seq data Workflow Automation Software and Protocols
Shell GNU General Public License v2.0 UpdatedSep 6, 2019 -
BWASPR Public
Forked from BrendelGroup/BWASPRR functions and scripts to process output from the BWASP workflow
R UpdatedAug 18, 2018 -
bghandbook Public
Forked from BrendelGroup/bghandbookHandbook for Brendel Group students, postdocs, and staff
Python UpdatedMay 22, 2018 -
i529 Public
Machine learning for Bioinformatics Lab module
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clinicaltrials Public
Mostly exploratory data analysis on clinicaltrials.gov data
Jupyter Notebook UpdatedSep 26, 2017 -
keras Public
Forked from kundajelab/kerasTheano-based Deep Learning library (convnets, recurrent neural networks, and more).
Python Other UpdatedAug 2, 2017 -
c-di-GMP Public
Mapping domain co-occurrence networks with emphasis on c-d-GMP binding domains.
Jupyter Notebook UpdatedMay 3, 2017 -
insole Public
A pressure-sensitive insole project
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knowledge_linker Public
Forked from glciampaglia/knowledge_linkerComputational Fact Checking from Knowledge Networks
Python Apache License 2.0 UpdatedJan 24, 2017 -
rice3k Public
Workflow for calling variants using data from 3000 Rice Genomes project
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heteroMutationRate Public
workflow for reproducing results of a nature paper
Jupyter Notebook UpdatedDec 15, 2016 -
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FMAB Public
Forked from BrendelGroup/FMABFundamental Models and Algorithms in Bioinformatics
Python UpdatedOct 25, 2016 -
rice3k-legacy Public
A bunch of stuff I am doing with the 3K rice genomes data (obsolete)
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find-by-SNP Public
find the best matching individual from population given a vcf file for unknown individual
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coilmd Public
MD simulation for a coarse grained DNA model, parallelized by OpenMP
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modeCouplingAnalysis.jl Public
A julia library for mode coupling analysis of protein simulations
Julia Other UpdatedMay 26, 2015 -
lammps Public
Forked from lammps/lammpslammps with harmonic-cosine potentials and other modifications for breakable bonds
C++ GNU General Public License v2.0 UpdatedDec 2, 2014 -