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A collection of tools for Hi-C data analysis

561 126 Updated Jan 11, 2025

An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.

C++ 88 27 Updated Aug 31, 2022

Spatiotemporal modeling of spatial transcriptomics

Python 257 31 Updated Dec 25, 2024

A python tool for identify lineage specific structure variation from multiple genome aligmnent

Python 1 Updated Oct 15, 2024

Fast and accurately polish the genome generated by long reads.

C 215 28 Updated Jan 9, 2025

Wuthering Waves ps (0.9.0)

C# 250 54 Updated Sep 13, 2024

鸣潮 后台自动战斗 自动刷声骸上锁合成 自动肉鸽 Automation for Wuthering Waves

Python 1,572 103 Updated Jan 16, 2025

Convert AI papers to GUI,Make it easy and convenient for everyone to use artificial intelligence technology。让每个人都简单方便的使用前沿人工智能技术

Jupyter Notebook 10,390 860 Updated Sep 20, 2024

一个用于把游戏封包内的文本抽取、翻译、替换的项目

Python 57 8 Updated Jul 27, 2022

Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis

50 13 Updated Apr 22, 2024
Jupyter Notebook 5 1 Updated Aug 23, 2023

Algorithm For Gene Order Reconstruction in Ancestors

Python 72 15 Updated Nov 7, 2024

Reproducibility repository accompanying 'Skin regeneration is enabled in the absence of fibroblast inflammatory priming' (Under Review). Single-cell datasets can be visualized on our Reindeer Atlas.

R 2 2 Updated Mar 18, 2022

EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to assemble large contigs into chromosomal-level scaffolds.

Perl 19 3 Updated Mar 11, 2023

A fast tool for detecting and decomposing segmental duplications in genome assemblies

Jupyter Notebook 46 Updated Feb 11, 2024

Workflow for Building Microsynteny Networks

Shell 48 27 Updated Jul 30, 2022

Benchmarking analysis of data integration tools

Python 324 64 Updated Jan 14, 2025

Analysis of cell-cell communication at single-cell resolution

R 100 13 Updated Sep 10, 2024
JavaScript 8 2 Updated Mar 1, 2024

Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements

Shell 19 6 Updated Jan 2, 2025
C++ 8 1 Updated Oct 6, 2022
Perl 73 25 Updated Jul 12, 2024

HiCorr: a Hi-C data bias-correction pipeline

Perl 28 7 Updated Jul 5, 2023

为GPT/GLM等LLM大语言模型提供实用化交互接口,特别优化论文阅读/润色/写作体验,模块化设计,支持自定义快捷按钮&函数插件,支持Python和C++等项目剖析&自译解功能,PDF/LaTex论文翻译&总结功能,支持并行问询多种LLM模型,支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, m…

Python 66,989 8,228 Updated Jan 16, 2025
R 6 Updated Dec 9, 2022

视频硬字幕提取,生成srt文件。无需申请第三方API,本地实现文本识别。基于深度学习的视频字幕提取框架,包含字幕区域检测、字幕内容提取。A GUI tool for extracting hard-coded subtitle (hardsub) from videos and generating srt files.

Python 6,479 704 Updated Dec 24, 2024

Simple and easy to use DDNS. Support Aliyun, Tencent Cloud, Dnspod, Cloudflare, Callback, Huawei Cloud, Baidu Cloud, Porkbun, GoDaddy, Namecheap, NameSilo...

Go 12,958 1,484 Updated Jan 18, 2025

Leveraging three-dimensional chromatin architecture for effective reconstruction of enhancer-target gene regulatory interactions

R 3 1 Updated May 12, 2021

Pipeline of analysing ATAC-seq data

1 Updated Jan 29, 2019
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