circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.

Multi-scale clustering in Python

RUV-III-PRPS: Removing unwanted variation from large-scale RNA sequencing data with PRPS

A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

Accompanying analysis code for the FRASER manuscript

Tissue-specific variant effect predictions on splicing

A deep learning-based tool to identify splice variants

Tools to process and analyze deep sequencing data.

A tool for detecting somatic variants in single cell data

The analysis repository for the Open Pediatric Brain Tumor Atlas Project

TCR and BCR assembly from RNA-seq data

Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.

NicheNet: predict active ligand-target links between interacting cells

AutoGPT is the vision of accessible AI for everyone, to use and to build on. Our mission is to provide the tools, so that you can focus on what matters.

Script to automatically create and run IGV snapshot batchscripts

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

This is the alpha version of the CellOracle package

The manuscript repository for the Open Pediatric Brain Tumor Atlas Project

R package containing useful functions for mutational signature analysis

This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster

🔬 Somatic workflow for Kids-First