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CHANGELOG.md

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[1.0.x] - tbd

Added

  • The phenocycler reader can now also read .tif files (not just .qptiff)
  • Added missing legend in the HTML report under the "Channels" section (#15)

[1.0.2] - 2024-01-15

Fix

  • When geometries are GeometryCollection, convert them back to Polygons (#11)
  • Give min_area parameter to the right Baysor function in snakemake

Added

  • API tutorial
  • sopa.spatial tutorial
  • Docstrings for the snakemake pipeline utils
  • Show right micron scale in the Xenium Explorer

Changed

  • sopa.stats is now called sopa.spatial

[1.0.1] - 2024-01-10

Added

  • Tutorial on CLI usage
  • Tutorial on image alignment with the Xenium Explorer
  • Multi-step segmentation (#8)
  • Tutorial for multi-step segmentation and custom segmentation
  • Improved installation guide

Fix

  • CLI issue (missing file) when used without Snakemake

Change

  • Use .parquet instead of .zarr.zip format to store intermediate boundary polygons

[1.0.0] - 2023-12-26

Added