howto

Collection of "how to"s regarding miscellaneous topics

Molecular Dynamics and visualization

• Install LAMMPS (it might be outdated)
• Topology psf files from LAMMPS data
• List of references for PyMol

Bioinformatics

• Thorought notebook guiding on how to build a model with MODELLER

Coding

• Python lint and format in VSCode
• Print code
• Using venv (no conda section yet)
• Use GNU diff and patch to apply patches to files

Linux

• Screen: run processes through ssh that do not close once you disconnect
• Setup Latex with VSCode in Manjaro. Other distros might have similar processes
• Setup and maintain a local NAS system
• Photography on linux
• My Firefox setup
• Customize Firefox to ensure privacy
• The CLI basics

Academic

• Use Zotero and sync it with Google Drive
• Use Inkscape to illustrate and setup images for scientific purposes: illustrations, modify plots, compose and so on.

Professional

• Notes on how to structure a Curriculum Vitae (in Italian)
• Notes on how to manage a Linkedin Account (in Italian)

Other

• Some nice touches to Thunderbird aesthetics and use
• Python class implementation of how to quickly apply the Bayes theorem