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University of California, Davis
- Davis, California
Stars
Bootloader for macOS, Windows and Linux in UEFI and in legacy mode
A central location for all 5Q data that has been obtained
GRBL CNC command sender, autoleveler and g-code editor
A script to measure and limit CPU time and memory consumption of black-box processes in Linux
A Python Pygame application for creating 8x8 images to load onto the Astro-Pi LED matrix
tools for adding mutations to existing .bam files, used for testing mutation callers
Efficient base quality score recalibrator for NGS data
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Workflow Description Language - Specification and Implementations
FireCloud user interface for web browsers.
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
NationalGenomicsInfrastructure / piper
Forked from Molmed/piperA genomics pipeline build on top of the GATK Queue framework
MuTect -- Accurate and sensitive cancer mutation detection
A set of tools for modelling ancestry patterns along the genome.
Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc
An open source platform for managing and analyzing biomedical big data