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  • University of California, Davis
  • Davis, California

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Showing results

The Jackson Laboratory Computational Sciences Nextflow based analysis pipelines

Nextflow 21 10 Updated Jan 3, 2025

Bootloader for macOS, Windows and Linux in UEFI and in legacy mode

C 4,674 630 Updated Feb 25, 2025

Mobile Data Collection made easy.

JavaScript 258 163 Updated Jul 30, 2015

Enhanced Karel-the-robot clone

JavaScript 47 36 Updated Nov 27, 2024

A central location for all 5Q data that has been obtained

C 18 Updated Aug 28, 2020

gamedev blog

3,292 144 Updated Mar 8, 2021

STM32 ILI9341 spi

C 88 31 Updated Oct 4, 2018

GRBL CNC command sender, autoleveler and g-code editor

Python 1,616 547 Updated Feb 24, 2025

A TO-220 breakout board, with heatsink.

IDL 2 Updated Mar 26, 2014

A script to measure and limit CPU time and memory consumption of black-box processes in Linux

Perl 485 69 Updated Nov 6, 2020

Design files for various projects

OpenSCAD 37 14 Updated Oct 9, 2023

A Python Pygame application for creating 8x8 images to load onto the Astro-Pi LED matrix

Python 56 19 Updated Mar 22, 2019

tools for adding mutations to existing .bam files, used for testing mutation callers

Python 238 86 Updated Oct 18, 2024

Get events from DLink DGS switches

Python 4 Updated Jul 4, 2014

Firmware Analysis Tool

Rust 12,120 1,615 Updated Mar 5, 2025

Efficient base quality score recalibrator for NGS data

Cuda 24 5 Updated Nov 28, 2015

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

Java 998 372 Updated Feb 27, 2025

Specification for the Workflow Description Language (WDL).

804 307 Updated Mar 4, 2025

FireCloud user interface for web browsers.

Clojure 19 8 Updated Jan 7, 2025

Cromwell Backend Repository

Scala 3 1 Updated Mar 8, 2016

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

Scala 1,012 359 Updated Mar 6, 2025

A genomics pipeline build on top of the GATK Queue framework

Scala 9 9 Updated Mar 13, 2017
Scala 1 Updated Jan 16, 2015

MuTect -- Accurate and sensitive cancer mutation detection

Java 96 41 Updated Feb 13, 2023

A set of tools for modelling ancestry patterns along the genome.

Python 22 14 Updated Jan 30, 2025

Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc

Python 107 48 Updated Sep 13, 2021

Java utilities for Bioinformatics

Java 494 133 Updated Mar 6, 2025

Tools for working with SAM/BAM data

D 580 107 Updated Dec 22, 2024

An open source platform for managing and analyzing biomedical big data

Go 400 119 Updated Mar 6, 2025
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