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parameter_codes.md

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Parameter codes

Input to summary workflows

Input to summary workflows must be in the format of:

PARAMCODE/METHOD/PARAMCODE_METHOD_OUTCODE.ext

Example: AA/MISO/AA_MISO_01.bed

PARAMCODE is described here. For more information on naming scheme refer to the execution workflow README.

Parameter code example table

PARAM_CODE dataset param_setting
AA P19 cores=4
AB P19 cores=12,mode=A
AC P19_subset cores=12,mode=A