Merge branch 'makefile' of github.com:telatin/fasten into telatin-mak…

…efile

Makefile

@@ -0,0 +1,38 @@
+
+# Bins: src/bin/*.rs -> target/debug/*
+DEBUG_BINS := $(patsubst src/bin/%.rs, target/debug/%, $(wildcard src/bin/*.rs))
+
+# Bins: src/bin/*.rs -> target/release/*
+RELEASE_BINS := $(patsubst src/bin/%.rs, target/release/%, $(wildcard src/bin/*.rs))
+
+all: $(DEBUG_BINS) $(DEBUG_LIBS)
+
+release: $(RELEASE_BINS)
+
+debug: $(DEBUG_BINS)
+
+$(DEBUG_BINS):
+	cargo build
+	echo "Built debug binaries at target/debug"
+
+# Rule to build release binaries
+$(RELEASE_BINS):
+	cargo build --release
+	echo "Built release binaries at target/release"
+
+# Test target: runs tests for each binary if corresponding script exists
+test: $(DEBUG_BINS)
+	for bin in clean combine kmer metrics pe quality_filter randomize regex repair replace sample shuffle straighten trim validate sort progress mutate normalize convert inspect; do \
+		if [ -e ./tests/fasten_$$bin.sh ]; then \
+			bash ./tests/fasten_$$bin.sh; \
+		fi; \
+	done
+
+# Clean target: removes the target directories if they exist
+clean:
+	if [[ -e ./target/debug ]]; then \
+		rm -rf ./target/debug; \
+	fi
+		if [[ -e ./target/release ]]; then \
+		rm -rf ./target/release; \
+	fi