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BPCells Public
Forked from bnprks/BPCellsScaling Single Cell Analysis to Millions of Cells
C++ Other UpdatedAug 30, 2024 -
ggVennDiagram Public
Forked from gaospecial/ggVennDiagramA 'ggplot2' implement of Venn Diagram.
R GNU General Public License v3.0 UpdatedAug 30, 2024 -
ollama Public
Forked from ollama/ollamaGet up and running with Llama 3.1, Mistral, Gemma 2, and other large language models.
Go MIT License UpdatedAug 28, 2024 -
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YesPlayMusic Public
Forked from qier222/YesPlayMusic高颜值的第三方网易云播放器，支持 Windows / macOS / Linux
Vue MIT License UpdatedAug 13, 2024 -
vscode-python Public
Forked from microsoft/vscode-pythonPython extension for Visual Studio Code
TypeScript MIT License UpdatedAug 13, 2024 -
omicverse Public
Forked from Starlitnightly/omicverseA python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
Jupyter Notebook GNU General Public License v3.0 UpdatedAug 5, 2024 -
PymolFold Public
Forked from JinyuanSun/PymolFoldProtein folding in Pymol
Jupyter Notebook MIT License UpdatedJul 30, 2024 -
foldmason Public
Forked from steineggerlab/foldmasonC GNU General Public License v3.0 UpdatedJul 30, 2024 -
EasySpider Public
Forked from NaiboWang/EasySpiderA visual no-code/code-free web crawler/spider易采集：一个可视化浏览器自动化测试/数据采集/爬虫软件，可以无代码图形化的设计和执行爬虫任务。别名：ServiceWrapper面向Web应用的智能化服务封装系统。
JavaScript Other UpdatedJul 29, 2024 -
scvi-tools Public
Forked from scverse/scvi-toolsDeep probabilistic analysis of single-cell and spatial omics data
Python BSD 3-Clause "New" or "Revised" License UpdatedJul 26, 2024 -
miloR Public
Forked from MarioniLab/miloRR package implementation of Milo for testing for differential abundance in KNN graphs
R GNU General Public License v3.0 UpdatedJul 23, 2024 -
rnaseq Public
Forked from nf-core/rnaseqRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Nextflow MIT License UpdatedJul 22, 2024 -
decoupleR Public
Forked from saezlab/decoupleRR package to infer biological activities from omics data using a collection of methods.
R GNU General Public License v3.0 UpdatedJul 21, 2024 -
liana-py Public
Forked from saezlab/liana-pyLIANA+: an all-in-one framework for cell-cell communication
Python GNU General Public License v3.0 UpdatedJul 18, 2024 -
ggsc Public
Forked from YuLab-SMU/ggsc🧠 Visualizing Single Cell and Spatial Transcriptomics
R UpdatedJul 18, 2024 -
Mellon Public
Forked from settylab/MellonNon-parametric density inference for single-cell analysis.
Jupyter Notebook GNU General Public License v3.0 UpdatedJul 17, 2024 -
cheatsheets Public
Forked from rstudio/cheatsheetsPosit Cheat Sheets - Can also be found at https://posit.co/resources/cheatsheets/.
TeX Creative Commons Attribution 4.0 International UpdatedJul 15, 2024 -
ProGen2-finetuning Public
Forked from hugohrban/ProGen2-finetuningFinetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
Python BSD 3-Clause "New" or "Revised" License UpdatedJul 11, 2024 -
CellphoneDB Public
Forked from ventolab/CellphoneDBCellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
Jupyter Notebook MIT License UpdatedJul 8, 2024 -
deepcell-tf Public
Forked from vanvalenlab/deepcell-tfDeep Learning Library for Single Cell Analysis
Python Other UpdatedJul 5, 2024 -
cytotrace2 Public
Forked from digitalcytometry/cytotrace2CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
R Other UpdatedJul 3, 2024 -
STARsolo Public
Forked from cellgeni/STARsolowrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq
Shell GNU General Public License v3.0 UpdatedJun 26, 2024 -
Pymol-script-repo Public
Forked from Pymol-Scripts/Pymol-script-repoCollected scripts for Pymol
Python UpdatedJun 19, 2024 -
convert2anndata Public
Forked from settylab/convert2anndataAn R package to convert SingeCellExperiment and Seurat objects into anndata as comprehensively as possible.
R GNU General Public License v3.0 UpdatedJun 19, 2024 -
PromoterCalculator Public
Forked from JinyuanSun/PromoterCalculatorPromoterCalculator from Salis lab
Python Other UpdatedJun 19, 2024 -
SpaTalk Public
Forked from ZJUFanLab/SpaTalkKnowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
R GNU General Public License v3.0 UpdatedJun 14, 2024 -
VISION Public
Forked from YosefLab/VISIONSignature Analysis and Visualization for Single-Cell RNA-seq
R MIT License UpdatedJun 10, 2024 -
spacexr Public
Forked from dmcable/spacexrSpatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
HTML GNU General Public License v3.0 UpdatedJun 4, 2024 -
TrackPlotR Public
Forked from yimingsun12138/TrackPlotRTrackPlotR is a useful tool for generating visualization track plots using various sequencing data.
R Other UpdatedMay 27, 2024