🙃 A delightful community-driven (with 2,400+ contributors) framework for managing your zsh configuration. Includes 300+ optional plugins (rails, git, macOS, hub, docker, homebrew, node, php, python…

Run macOS VM in a Docker! Run near native OSX-KVM in Docker! X11 Forwarding! CI/CD for OS X Security Research! Docker mac Containers.

Unix, R and python tools for genomics and data science

A template for setting up an AWS environment from scratch.

the pangenome graph builder

Read a yaml file and create variables in bash

DNA sequencing analysis notes from Ming Tang

Analysis pipelines for genomic sequencing data

Pipeline for structural variant image curation and analysis.

Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data

The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and …

A collection of unexpected challenges and learnings with nextflow and nf-core.

Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2

viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data

A collection of scripts used to recreate files and graphs used in the MMRF CoMMpass analysis.

Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.

call copy number from WES(WXS)

Mapping, filtering, and data hub visualisation pipeline for DNase, ATAC, ChIP data

Ribo-seq data analysis tool

Docker container built on bioconductor/bioconductor_docker

Sample contamination/relationship analysis

Docker container to download dbNSFP 'database' and wrangle it into a format suitable for pipeline annotation process