Clair3-RNA - a long-read small variant caller for RNA sequencing data

Machine Learning Journal for Intermediate to Advanced Topics.

A cheatsheet for basic best practice in R programming

A collection of scripts used to recreate files and graphs used in the MMRF CoMMpass analysis.

Workshop: `{shinylive}`: _Serverless_ Shiny applications workshop. An exercise in deploying your App to GitHub Pages

List of papers about Proteins Design using Deep Learning

User friendly and accurate binder design pipeline

Generate IGV style locus tracks from bigWig files in R

Methods to discover gene programs on single-cell data

gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data

Repository for Immune Atlas Research Consortium at MMRF for storing research project code

A checklist template for R code review

Biological sequence analysis for the modern age.

Shiny server configuration with Nginx load balancer

Explainable AI for Bioinformatics

Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.

Data Cleaning for Data Sharing Using R

Functions used for wrangling education research data

Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"

CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.

A lightweight library for generating synthetic instruction tuning datasets for your data without GPT.

A comprehensive toolkit for mutational signature analysis

Toolkit for metacell analysis

Panel: The powerful data exploration & web app framework for Python