Generate IGV style locus tracks from bigWig files in R

A curated list of Quarto talks, tools, examples & articles! Contributions welcome!

Magic potions to clean and transform your data 🧙

The D4 Quantitative Data Format

🌌 The R easystats-project

cython + htslib == fast VCF and BCF processing

Probabilistic Learning for mlr3

🌸 A command-line fuzzy finder

seqcover allows users to view coverage for hundreds of genes and dozens of samples

✅ Solutions to LeetCode by Go, 100% test coverage, runtime beats 100% / LeetCode 题解

Run macOS VM in a Docker! Run near native OSX-KVM in Docker! X11 Forwarding! CI/CD for OS X Security Research! Docker mac Containers.

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

PRML algorithms implemented in Python

SquiggleKit: A toolkit for manipulating nanopore signal data

📜 🎉 Automated reporting of objects in R

mlr3: Machine Learning in R - next generation

OpenML AutoML Benchmarking Framework

Themes for base plotting system in R

R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE

genetic variant expressions, annotation, and filtering for great good.

[NOTE: Project in suspended animation for now] Reversible Reproducible Documents

Useful bash one-liners for bioinformatics.

Adapters for trimming

LaTeX beamer theme for University of Chicago-themed presentation slides

🙃 A delightful community-driven (with 2,400+ contributors) framework for managing your zsh configuration. Includes 300+ optional plugins (rails, git, macOS, hub, docker, homebrew, node, php, python…

Free monospaced font with programming ligatures

Resources from my Rstudio::conf 2019 talk

Use RMarkdown to generate PDF Conference Posters via HTML

✅🔻 A collection of alternate R markdown templates