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@marbl

MarBL

Maryland Bioinformatics Labs

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  1. CHM13 CHM13 Public

    The complete sequence of a human genome

    941 99

  2. canu canu Public

    A single molecule sequence assembler for genomes large and small.

    C++ 669 179

  3. Krona Krona Public

    Interactively explore metagenomes and more from a web browser.

    JavaScript 467 103

  4. Mash Mash Public

    Fast genome and metagenome distance estimation using MinHash

    C++ 399 91

  5. verkko verkko Public

    Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

    Python 319 30

  6. merqury merqury Public

    k-mer based assembly evaluation

    Shell 302 21

Repositories

Showing 10 of 39 repositories
  • HG002-issues Public

    HG002 human reference genome issue tracking and polishing

    marbl/HG002-issues’s past year of commit activity
    10 0 23 0 Updated Feb 24, 2025
  • verkko Public

    Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

    marbl/verkko’s past year of commit activity
    Python 319 30 22 0 Updated Feb 24, 2025
  • meryl Public

    A genomic k-mer counter (and sequence utility) with nice features.

    marbl/meryl’s past year of commit activity
    C 128 14 36 0 Updated Feb 24, 2025
  • canu Public

    A single molecule sequence assembler for genomes large and small.

    marbl/canu’s past year of commit activity
    C++ 669 179 6 2 Updated Feb 24, 2025
  • meryl-utility Public

    A collection of miscellaneous code used by Meryl, Canu and others.

    marbl/meryl-utility’s past year of commit activity
    C 1 3 0 0 Updated Feb 24, 2025
  • T2T-Browser Public

    Genome browser hub for the T2T genomes and resources

    marbl/T2T-Browser’s past year of commit activity
    HTML 17 3 0 0 Updated Feb 21, 2025
  • ModDotPlot Public
    marbl/ModDotPlot’s past year of commit activity
    Python 132 MIT 10 6 0 Updated Jan 28, 2025
  • anianns Public

    ANI based satellite annotation

    marbl/anianns’s past year of commit activity
    Python 0 0 1 0 Updated Jan 23, 2025
  • parsnp Public

    Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surroundin…

    marbl/parsnp’s past year of commit activity
    C++ 135 27 31 0 Updated Jan 23, 2025
  • HG002 Public

    A complete diploid human genome

    marbl/HG002’s past year of commit activity
    113 5 1 0 Updated Jan 14, 2025
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