Using GenArk version as the reference

• Link to the hub: https://research.nhgri.nih.gov/CustomTracks/T2T_hubs/T2T_GenArk/hub.txt
• Hub Connect

genomes.txt

Leave only

genome [RefSeq Acc.]
trackDb
groups

Copying over trackDb.txt files

for i in $(seq 1 6)
do
  sp=`sed -n ${i}p ../incoming/path.txt | awk '{print $1}'`
  mkdir -p ${sp}_v2.0
  cp ../T2Tgenomes/${sp}_v2.0/*.txt ${sp}_v2.0/
done